BAC Information

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BAC

Clone NameMSMg01-467E22
Chromosome1 (Build37)
Map Location 80,879,589 - 81,063,204
singlet/doubletdoublet
Overlap geneLOC665092
Upstream geneEG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
Downstream gene9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467E22.T7 (MSMg01no467_e22.b1)MSMg01-467E22.TJ (MSMg01no467_e22.g1)
ACCAG551048AG551049
length748766
length of high quality
(start - end)		507 (66 - 572)486 (66 - 551)
definitionCHROMAT_FILE: MSMg01no467_e22.b1 PHD_FILE: MSMg01no467_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:08 2005CHROMAT_FILE: MSMg01no467_e22.g1 PHD_FILE: MSMg01no467_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,879,589 - 80,880,094)(81,062,733 - 81,063,204)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGAATCCGCGGAATTCACTA
TTATTATCAAATGAAATAAAATGTATTTGAAATTTTAACTTATATAACTA
TTAATACATGTGTTCTACATAAAGACTCTGGAGAAGGCAACTACTTCTAA
AAATATAATGGATCAAGAATATATGATTTAATACCCACTGTACCTCATTT
TGAGTGTTTTGATATTTTATTCAACTCTATTTCCTCTTAAAAGAACCCAC
TGAGTTTAGTTAGTGCTGCCTGTGAGTTCATGGATATGGTGCCATACTCT
AGAGCAAAGACTTCCTGTCAATGACCACATTCATGAAGAAAATTGACTCT
TCATTTCCCAACATCCATAACTACCAATAATCCTTCATCTAGAGGTGGAG
TCTGGTGAACTCCTTCCATACCCATGCTGGAATCATGAATAGCTTGTTCC
TGGGCCAATAGCACAGTTGGTATGTGTTTGCGTATGTGGTCTGTGTCAAA
TCCAGAAGAAAGGATTTCACACCATTGCTATCTTACAAGTCTTTTACCTC
AATGTTCCCTAACCACTGGAGACTGGGACAGAGTTGCTATAGACATCCTA
TTTATGACTGAGCATTTAACAGTCAGNTATTCTGTTATGAGTTTGTATTA
ATGAGTTATGAGTCTGTATTAATGCTTGTACACTCCAAAAAGGCTCTCTG
AAATTAAAACAAAATAATTTGGCAGCAAAAAACTCTCCTACTATGACN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGCTCTAGGAGATCCAGTGCTTTCTTCTAGCCTCT
AAGAGCACCGTATTCATGGGGACAAAGTCTACACACAGACAAGCACAAGC
ATACATAATTAACATTTTAAATAAAATATTTAAAAAGGACAAAGCAGTAT
ATTTTTACATGCTTGTCTAAAGCTGAAATTTGTAACAACTATATGCAACT
AATAATTTAAATGATTTAAATTTTTAATTGATTACAGTGTTCTGTTCTTA
TAAATATATGCATCTATATAATATTTTCTAGGTATACTTATGTCTCATTG
CTTATAGATAAACATAGAAAGAGTGGGTTAATTCAAAACCAAATATTCAT
TTGGTTCTCCTTCAAATTTTCTACCTAAAACACATTAGAATTCTGGAAAT
TTTCTTTCTGTAATTCTATTATTTGTTGGCTTTGGAATTTAAGGGAGCCT
TTCTGTGTCCCCCAAAGTCAGCCATTTTGTCACAACGTCTATCTTGGTTA
ATGAATCAGAATTCTTCATGACCAACACCCAGAATTAAATCAACTTGAAA
CATAAAGCTGAGCTACTGAAAAAATTATTTGTGGATCATTTCATGATAAA
ACATGGCTCCCATTACAAATGGGATGAAACCGGGTTTACCCTGGGGGCCA
AAAGGAATGACGGGGACTTGGGAGAAAAAATCCGGGTTCCCCCAAAATTC
TATTATAGGGGGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_e22.b1 MSMg01no467_e22.b1 CHROMAT_FILE:
MSMg01no467_e22.b1 PHD_FILE: MSMg01no467_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:08 2005
         (507 letters)



>mm_chr1_80879388_80880294
          Length = 907

 Score =  932 bits (482), Expect = 0.0
 Identities = 500/506 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   taaaatgtatttgaaattttaacttatataactattaatacatgtgttctacataaagac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taaaatgtatttgaaattttaacttatataactattaatacatgtgttctacataaagac 261

                                                                       
Query: 62  tctggagaaggcaactacttctaaaaatataatggatcaagaatatatgatttaataccc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctggagaaggcaactacttctaaaaatataatggatcaagaatatatgatttaataccc 321

                                                                       
Query: 122 actgtacctcattttgagtgttttgatattttattcaactctatttcctcttaaaagaac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actgtacctcattttgagtgttttgatattttattcaactctatttcctcttaaaagaac 381

                                                                       
Query: 182 ccactgagtttagttagtgctgcctgtgagttcatggatatggtgccatactctagagca 241
           ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 ccactgattttagttagtgctgcctgtgagttcatggacatggtgccatactctagagca 441

                                                                       
Query: 242 aagacttcctgtcaatgaccacattcatgaagaaaattgactcttcatttcccaacatcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aagacttcctgtcaatgaccacattcatgaagaaaattgactcttcatttcccaacatcc 501

                                                                       
Query: 302 ataactaccaataatccttcatctagaggtggagtctggtgaactccttccatacccatg 361
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ataactaccaataacccctcatctagaggtggagtctggtgaactccttccatacccatg 561

                                                                       
Query: 362 ctggaatcatgaatagcttgttcctgggccaatagcacagttggtatgtgtttgcgtatg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 562 ctggaatcatgaatagcttgttcctgggccaatagcacagttggtatgtgtttgcttatg 621

                                                                       
Query: 422 tggtctgtgtcaaatccagaagaaaggatttcacaccattgctatcttacaagtctttta 481
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 622 tggtctgtgtcaaatccagaagaaaggatttcacaccactgctatcttacaagtctttta 681

                                     
Query: 482 cctcaatgttccctaaccactggaga 507
           ||||||||||||||||||||||||||
Sbjct: 682 cctcaatgttccctaaccactggaga 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no467_e22.g1 MSMg01no467_e22.g1 CHROMAT_FILE:
MSMg01no467_e22.g1 PHD_FILE: MSMg01no467_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:08 2005
         (486 letters)



>mm_chr1_81062319_81063204
          Length = 886

 Score =  874 bits (452), Expect = 0.0
 Identities = 467/472 (98%)
 Strand = Plus / Minus

                                                                       
Query: 15  cagtgctttcttctagcctctaagagcaccgtattcatggggacaaagtctacacacaga 74
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 886 cagtgctttcttctagcctctaagagcaccatattcatggggacaaagtctacacacaga 827

                                                                       
Query: 75  caagcacaagcatacataattaacattttaaataaaatatttaaaaaggacaaagcagta 134
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 taagcacaagcatacataattaacattttaaataaaatatttaaaaaggacaaagcagta 767

                                                                       
Query: 135 tatttttacatgcttgtctaaagctgaaatttgtaacaactatatgcaactaataattta 194
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 766 tatttttacatgcttgtctaaagctgaaatttgtatcaactatatgcaactaataattta 707

                                                                       
Query: 195 aatgatttaaatttttaattgattacagtgttctgttcttataaatatatgcatctatat 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aatgatttaaatttttaattgattacagtgttctgttcttataaatatatgcatctatat 647

                                                                       
Query: 255 aatattttctaggtatacttatgtctcattgcttatagataaacatagaaagagtgggtt 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aatattttctaggtatacttatgtctcattgcttatagataaacatagaaagagtgggtt 587

                                                                       
Query: 315 aattcaaaaccaaatattcatttggttctccttcaaattttctacctaaaacacattaga 374
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 586 aattcaaaaccaaatattcatttggttctccttcaaattttctgcctaaaacacattaga 527

                                                                       
Query: 375 attctggaaattttctttctgtaattctattatttgttggctttggaatttaagggagcc 434
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 526 attctggaaattttctttctgtaattctattatctgttggctttggaatttaagggagcc 467

                                                               
Query: 435 tttctgtgtcccccaaagtcagccattttgtcacaacgtctatcttggttaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tttctgtgtcccccaaagtcagccattttgtcacaacgtctatcttggttaa 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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