TTATATTTGCGGCGCTAATAGACTCCTAAATACAGACTAGCGCGGAATCA
CTCTGTTTCAAAACTGGCCTCAAGTTGGATTTATGTCTGTGGTTTCATGA
ACAAACAGTCCTTTAAATGTATTTGTGTTGTGTTTCTTGACCCGTGTCAT
TTGTGACTAATCTAGATCTAGTCTTCTTGGCCCTCCTCAGTTCATTGCTG
CCTCAGCTACTCCCAGGCTTTCTTTTCTGGTGGACCTTCTCTCCACAGCC
CACCTTTCCTCATCCAGAGACTTATAAACCTCTTTAACAAGTGAACAGAT
TGGTATTTATCTTTAAACACAGGAGTGGGGGAACACTCATAAGTATACTG
TTAAAACATTTCCTTCTGATCTTTATTTTTTAAACCTTGGTTGATGCTTC
TCTCACTATTAAAACTGTGAGATATATATATAGATCCCCATGTCACCTAC
CACCTCTAGTAACTACAGATCTTAGCACTCTGCTCCTTTTCTGAAACTTT
CTGTTGGCCCTCTTGACCACAGGTTCAAGGCCCTCAGAATGTGGTCACAG
CCCTTTTCCCTTATCCCTGCTACTCCCTCCTCTACATATAACCTCTATTG
CTAAAACATCAGCCTACTTGGCTATCCTTACCCCTTTGTTCAGTAAACGA
ATCACTTTCTGTTCATGTTTCACACTTCTCATATTTTCAGCTGTTCCAGT
CCTCTTTA

CATTGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTACCGCAAAATTCCACTTACAGCTAGAGCTACATAGTNG
AGGCTCTGCCTCAAAAAAAAAAAAAAAAAAAAAGTTTCAAGTTGCAATCA
AATTATTACTACCAACAAAGCCATCTTTCACCAAAGGCAACCACTGCCCC
AATTTTAATTGTAAGCTCGTTTTTAAAATGCACACAAATTGCATTCATTA
CTCACACATGTCTGGTTCATAGCTATCTTTTAAATTTTATTTTCTCTCAG
AATTTTTGGGTGTATCCCTCCTGATACTGTAATATCAAAAAGTATACTAG
GATCTTGACACACAAGCAGATCTTTCAACTACTGCTGCAATCTGGTAAAT
AAAAGACAGAGAACAGTATTTGCAGAAAAAGTCAAATTCCTGAAATCAAT
GCATGATGAAATAGAATGGACTGGGTTTTACTATTTTAAAATTACTATGC
CAGAATTTAAACTCAAATAACTACATTTAAACCATTCATGGGAAGTCTAA
TAGACACATTTAATGTATACATGTGGCTAAGACAAGCAATTTTCCACATT
TTTGAAGCCTCATGAATACACCCGGTCCGTAGAGGTTATTAATTATTAAA
AAAAACCGCTTTGGTTAACAAACTCCACCCCTTGCTAAACACGAATTACC
CTCTATTAACTTTTATGATAGTTTACTCCCCTTAACAAN

Query= MSMg01no467_f11.b1 MSMg01no467_f11.b1 CHROMAT_FILE:
MSMg01no467_f11.b1 PHD_FILE: MSMg01no467_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:10 2005
         (229 letters)



>mm_chr1_159059769_159060397
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggatttatgtctgtggtttcatgaacaaacagtcctttaaatgtatttgtgttgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttggatttatgtctgtggtttcatgaacaaacagtcctttaaatgtatttgtgttgtgtt 370

                                                                       
Query: 61  tcttgacccgtgtcatttgtgactaatctagatctagtcttcttggccctcctcagttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcttgacccgtgtcatttgtgactaatctagatctagtcttcttggccctcctcagttca 310

                                                                       
Query: 121 ttgctgcctcagctactcccaggctttcttttctggtggaccttctctccacagcccacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttgctgcctcagctactcccaggctttcttttctggtggaccttctctccacagcccacc 250

                                                            
Query: 181 tttcctcatccagagacttataaacctctttaacaagtgaacagattgg 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcctcatccagagacttataaacctctttaacaagtgaacagattgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no467_f11.g1 MSMg01no467_f11.g1 CHROMAT_FILE:
MSMg01no467_f11.g1 PHD_FILE: MSMg01no467_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:11 2005
         (476 letters)



>mm_chr1_158867733_158868608
          Length = 876

 Score =  799 bits (413), Expect = 0.0
 Identities = 454/469 (96%), Gaps = 6/469 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   acagctagagctacatagtngaggctctgcctcaaaaaaaaaaaaaaaaaaaaa---gtt 65
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||
Sbjct: 207 acagctagagctacatagt-gaggctctgcctcaaaaaaaaaaaaaaaaaaaaaaaagtt 265

                                                                       
Query: 66  tcaagttgcaatcaaattattactaccaacaaagccatctttcaccaaaggcaaccactg 125
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcaagttgcaatcaaattattattaccaacaaagccatctttcaccaaaggcaaccactg 325

                                                                       
Query: 126 ccccaattttaattgtaagctcgtttttaaaatgcacacaaattgcattcattactcaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccccaattttaattgtaagctcgtttttaaaatgcacacaaattgcattcattactcaca 385

                                                                       
Query: 186 catgtctggttcatagctatcttttaaattttattttctctcagaatttttgggtgtatc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catgtctggttcatagctatcttttaaattttattttctctcagaatttttgggtgtatc 445

                                                                       
Query: 246 cctcc-tgatactgtaatatcaaaaagtatactaggatcttgacacacaagcagatcttt 304
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 c-tccctgatactgtaatatcaaaaagtatactaggatcttgacacacaagcagatcttt 504

                                                                       
Query: 305 caactactgctgcaatctggtaaataaaagacagagaacagtatttgcagaaaaagtcaa 364
           ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 caacttctgctgcaatctggtgaataaaagatagagaacagtatttgcagaaaaagtcaa 564

                                                                       
Query: 365 attcctgaaatcaatgcatgatgaaatagaatggactgggttttactattttaaaattac 424
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 attcctgaaatcaatgcatggtgagatagaatggactgggttttactattttaaaattac 624

                                                            
Query: 425 tatgccagaatttaaactcaaataactacatttaaaccattcatgggaa 473
           ||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 625 tatgccagaatttaagctcaaataactatacttaaaccattcatgggaa 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)