BAC Information

Click to search

BAC

Clone NameMSMg01-467H02
Chromosome1 (Build37)
Map Location 41,080,659 - 41,080,888
singlet/doubletsinglet
Overlap genenone
Upstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467H02.T7 (MSMg01no467_h02.b1)MSMg01-467H02.TJ (MSMg01no467_h02.g1)
ACCAG551150AG551151
length831358
length of high quality
(start - end)
232 (43 - 274)---
definitionCHROMAT_FILE: MSMg01no467_h02.b1 PHD_FILE: MSMg01no467_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:19 2005CHROMAT_FILE: MSMg01no467_h02.g1 PHD_FILE: MSMg01no467_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCAAGTCCCTTTATTTTTGATTTTCTGAAGCTTTAGTATGCTTGCA
TGTATTTTTATGGTGGGCACACACCCACATTTATTGTACATGTTGCTTCT
TGTGTTCTGGGATCTATCCATCCATCTATCTGTGTATCTACCATCTAGGT
ATCTATGTATGTATGCATGCATGCATGTATCTATGTAAGTATGTATGTAT
GTATGTATGTATGTATGTATGTTTTTTTTCTCTTTTTTCCTTTTCTCTTT
CTTCTTCCCCTCTTTTTTTTTGTACTTTCTTTCCTTTCTTCCTTATACTA
CTTTTCCTCTTCTCCTTTTTCCTTTCTTCTATTTCTTCCCTCTTCCTTTT
TTTTCTTTTTATTTTTTCTTCCCTTCCCATCTTTTCCTTTCTCTTTCCCT
TTCTTTTTTTTTCTCTTATTTTTTCTATCCTCTTTTCTTTTCCCTCTCCC
CTTTCTTTTTTATTCCACTCTTTTTCCCTCTTTCCTTCTCCTTCCTTTCA
TATATCTTTTTTTTCATCTTCTCCTTCCCCCTTCTTTTTCTTATAATACT
CTCCACTTTTTCTCCTCTCCTTTATCTTTTTATTTTTTCTTTTCCCTCCT
ACTTTTTCTCCCCCTTTATCTCCCTTTCACCCCACACCTATTTTTATCCT
CTTCTCCTCTTATTTACATTCCATATCTTTTCTCTATATACTCCCCATCA
CTATATTCTCCCCTTTTCTCTCCACTATACTATCATCTTCCTTCTTTCCC
CCCTCTTTCTTCTTTTATCATCTTTTTCTTT
CACAAAACGCCCCGTCAATAGACAAATTCCNAACANGAGNGNAACGCCCC
CNNCCCNNCACCACCAACACCACAACACCCCACCCCCCCACCCCCCCCCC
CCNNCNCGCCCCCCCAACCCATTTGGGGCACGGGGGGGTGCGGGTGCGGG
TGCGGTTAGAATTGATGCTGCTTTNCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA
TTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_h02.b1 MSMg01no467_h02.b1 CHROMAT_FILE:
MSMg01no467_h02.b1 PHD_FILE: MSMg01no467_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:19 2005
         (232 letters)



>mm_chr1_41080455_41081086
          Length = 632

 Score =  375 bits (194), Expect = e-108
 Identities = 220/230 (95%), Gaps = 4/230 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcaagtccctttatttttgattttctgaagctttagtatgcttgcatgtatt 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcaagtttctttatttttgattttctgaagctttagtatgcttgcatgtatt 264

                                                                       
Query: 65  tttatggtgggcacacacccacatttattgtacatgttgcttcttgtgttctgggatcta 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 tttatggtgggcacacacccacatttattgtacatgctgcttcttgtgttctgggatcta 324

                                                                       
Query: 125 tccatccatctatctgtgtatctaccatctaggtatctatgtatg--t--atgcatgcat 180
           |||||||||||||||||||||||| ||||||||||||||| ||||  |  ||||||||||
Sbjct: 325 tccatccatctatctgtgtatctatcatctaggtatctatatatgcatgcatgcatgcat 384

                                                             
Query: 181 gcatgtatctatgtaagtatgtatgtatgtatgtatgtatgtatgtatgt 230
           |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 gcatgtatctatgtaagtatgtatgtatgtatatatgtatgtatgtatgt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)