Query= MSMg01no467_i08.b1 MSMg01no467_i08.b1 CHROMAT_FILE:
MSMg01no467_i08.b1 PHD_FILE: MSMg01no467_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:25 2005
(412 letters)
>mm_chr1_127837969_127838779
Length = 811
Score = 743 bits (384), Expect = 0.0
Identities = 406/414 (98%), Gaps = 3/414 (0%)
Strand = Plus / Plus
Query: 1 ttctctcagtgtgctctgtccacactggcctgggaacatactgcgcgtgcagtatggacc 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ttctctcagtgtgctctgtccacactggcctggga-catactgcgcgtgcagtatggacc 259
Query: 61 tgctgtactctgcccataagctccagcatataccacctgtcaaaacttcatctaacttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgctgtactctgcccataagctccagcatataccacctgtcaaaacttcatctaacttct 319
Query: 121 tattcaagcatccgctcttcacagagaccccagtcaatcactttcagtgggctcatgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tattcaagcatccgctcttcacagagaccccagtcaatcactttcagtgggctcatgatt 379
Query: 181 gcagatctacccttttttatccatttaaaacaggtatatcattgggttgcctagatgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcagatctacccttttttatccatttaaaacaggtatatcattgggttgcctagatgcat 439
Query: 241 cattgtttatgtgttcatgccaccaggccctatgatccaaattcaatcccaggaaacaca 300
|| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagtgatgaggtgttcatgccaccaggccctatgatccaaattcaatcccaggaaacaca 499
Query: 301 caggtagaaagaaaaacacaactacaggaaattgtcctctggcccccacatgcacactgt 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 caggtagaaagaaaaacacaactgcaggaaattgtcctctggcccccacatgcacactgt 559
Query: 361 gttgcacagccatgcatgcgcatgtgcacgtggacacacacac--cctaataga 412
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 gttgcacagccatgcatgcgcatgtgcacgtggacacacacacaccctaataga 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space: 323206
Effective search space used: 323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_i08.g1 MSMg01no467_i08.g1 CHROMAT_FILE:
MSMg01no467_i08.g1 PHD_FILE: MSMg01no467_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:25 2005
(459 letters)
>mm_chr1_128020230_128021088
Length = 859
Score = 835 bits (432), Expect = 0.0
Identities = 444/448 (99%)
Strand = Plus / Minus
Query: 1 agcactggcactggaaaacgagaatcagagagaacagtatgagcgatgtcttgatgaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agcactggcactggaaaacgagaatcagagagaacagtatgagcgatgtcttgatgaggt 389
Query: 61 aaggctgaggaagagggcagagagaagctaggcttggttaggatcttgatcaggtccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaggctgaggaagagggcagagagaagctaggcttggttaggatcttgatcaggtccaag 329
Query: 121 ggcatatgaatcccatgcttcacacaatggtaatgttttctcccaacaaaaggaagttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggcatatgaatcccatgcttcacacaatggtaatgttttctcccaacaaaaggaagttgt 269
Query: 181 atacagatgtccactctgaaatattagtttcttagcctcccctcccccataaatgcaccc 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaacagatgtccactctgaaatattagtttcttagcctcccctcccccataaatgcaccc 209
Query: 241 tctacatgtctcttttatctcgcccctctcccttccttcctatctctttcctctctgctc 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tctacatgcctcttttatctcgcccctctcccttccttcctatctctttcctctctgctc 149
Query: 301 tctttcccctttctctcctgtctccttcctcttttttctgtctctgtatctcttctcccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tctttcccctttctctcctgtctccttcctcttttttctgtctctgtatctcttctcccc 89
Query: 361 ctcctttgcttcatccctctctctgactttcatctctctctctcctatatgagtatccct 420
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 88 ctcctttgcttcattcctctctctgactttcatctctctctctcctatatgaatatccct 29
Query: 421 ctatgtgtatctcctcttctctctctcc 448
||||||||||||||||||||||||||||
Sbjct: 28 ctatgtgtatctcctcttctctctctcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
