BAC Information

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BAC

Clone NameMSMg01-468C17
Chromosome1 (Build37)
Map Location 41,534,707 - 41,534,949
singlet/doubletsinglet
Overlap genenone
Upstream geneIl18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468C17.T7 (MSMg01no468_c17.b1)MSMg01-468C17.TJ (MSMg01no468_c17.g1)
ACCAG551704AG551705
length830801
length of high quality
(start - end)
252 (53 - 304)184 (75 - 258)
definitionCHROMAT_FILE: MSMg01no468_c17.b1 PHD_FILE: MSMg01no468_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:16 2005CHROMAT_FILE: MSMg01no468_c17.g1 PHD_FILE: MSMg01no468_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTACTTCTTTACTCCCTGAACAACACTTAAATGAAAAAC
TTCCACAATGAAGTAGCAGAAAATGGTAGAGTTTTGAAAAGTTCTTCATG
CTTATTTATTTAATTTTAAGTTAAATCTGCTCATATAGAAGTCAGGGAGA
CACCCTTTGTGAACCAAAGCGTTTCCTCCAGTGCTGCATGCATGCATGTA
TGTGCGTGCATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTAATAAATTTTTTAAAAAATTATTTTTTTTTTTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATTAAATCCCCCACCACCCAAAACAAAAAATAAACA
TTCAATTTCTTTTCTTCTTTTATCCCCCCCTTTACTTTTCTCTTTTATTT
TTTTCCTTTTTTCTTCTTTTTTCTCCCCTTTTTTTTCATTATTTTATTTA
ACACATTTTTTTTTTTTAATATTTTTTTCTCTTCCTTTATCTATTTTTTT
TCTTCTTTCTTTTATTTCTTAAATTTATTTTCCTTCTTCCCTCTTAATCT
ATCTTTATTATTTTATTCCTTTTATTCTTTCCCTATCTTTTCTCTTATTT
TCTCCTTCTATCTACTTTTTCTTCTTCTATCTCCTTTTTTATACCTTTCT
TACTATTTTATTTTTACAATATTTTTCCTCACACAACCTCTCACACACTT
CCTACTTCCCTCCTCTCTTACTTTCCCCCTACTTCACTCCCCCTTATCCT
CTTCATATTTTTCGATTTCTCTCTCTCCTT
TCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCAGGAATTCTCTATTGTGATTCAAACAAATGT
TGTTAAATTTATTATGATGCATTTCTAGATTTTCTTTGATGGTATAAGTA
AATATATACTTTTAACTTCTTAACACACACACACACACACATATGTGTGT
GTGTGTGTGTGTGTATATATATATATATATATATATATATATACACACAC
ACACACACATATATGTGTGTGTGTGTGTGTGTGTGAGAGAGATATATATA
TATATATATACATAGAGACACAAAATATTTTTTTTTATATATATATATAT
ATATGTGTGTGTGTATATATATATATATGTGTGTGTGTGTATATATAGAT
ATATATATATATATAGAGAGGGGCGCGCGGGCGAGAGACAGACCTTTTTG
CGCGTGTGTGTGCGAGAGATATATATATATATATATATATATATATCTCC
TTCCTCCTCTATTCTTTATTCTTATCACCTTTCCTTTTTTTTAATTTTTC
TTCTCGATTCATTCTAACTCTACATCCTCTCTTCGTCTTTTTTTTTCTCT
TTTTCTCTCCCCTCTTTCTTCTTCTTTTATATATATCCTTTTCTATACTT
ATTTACCTCCTCCCTTCACTCCTTTTTTTTCTTTTCTTTTTATCACAACG
ATTATATTCGACCTATCTTCATCTATTCTCCCTTTCCCTACATCTTTTTT
TAGCTTTTGTATTCACCCCACCTTCTACATTCATGCCTTGATGCTTATCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_c17.b1 MSMg01no468_c17.b1 CHROMAT_FILE:
MSMg01no468_c17.b1 PHD_FILE: MSMg01no468_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:16 2005
         (252 letters)



>mm_chr1_41534556_41535207
          Length = 652

 Score =  416 bits (215), Expect = e-121
 Identities = 236/243 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcctacttctttactccctgaacaacacttaaatgaaaaacttccacaatgaagta 63
           ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 394 gaattcctacttccttactccctgaacagcacttagatgaaaaacttccacaatgaagta 335

                                                                       
Query: 64  gcagaaaatggtagagttttgaaaagttcttcatgcttatttatttaattttaagttaaa 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 334 gcagaaaatggtagagttttgaaaagtacttcatgcttatttatttaattttaagttaaa 275

                                                                       
Query: 124 tctgctcatatagaagtcagggagacaccctttgtgaaccaaagcgtttcctccagtgct 183
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 274 tctgctcatatagaagtcagggagacactctttgtgaaccaaagtgtttcctccagtgct 215

                                                                       
Query: 184 gcatgcatgcatgtatgtgcgtgcatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gcatgcatgcatgtatgtgcatgcatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 155

              
Query: 244 gtg 246
           |||
Sbjct: 154 gtg 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)