BAC Information

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BAC

Clone NameMSMg01-468J23
Chromosome1 (Build37)
Map Location 155,438,144 - 155,438,479
singlet/doubletsinglet
Overlap genenone
Upstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl
Downstream geneLOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468J23.T7 (MSMg01no468_j23.b1)MSMg01-468J23.TJ (MSMg01no468_j23.g1)
ACCAG552051AG552052
length773747
length of high quality
(start - end)
432 (75 - 506)50 (81 - 130)
definitionCHROMAT_FILE: MSMg01no468_j23.b1 PHD_FILE: MSMg01no468_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:54 2005CHROMAT_FILE: MSMg01no468_j23.g1 PHD_FILE: MSMg01no468_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGACAC
CGCGGAATTCACGGCAGCTTTCCTTACCTGAACAAGGACAAGCCAATCAA
TCGAGGAGGTCTGGGGATGGAACTTAAAAGGCCTTCCGACTAGCTGAGGC
GCGTCAGTGTAGCTGCCGGTAGGTTTCTTTTCCTTGGTTTTCCATAACTA
TGGCATCTGATGAAGAGACAGTTTAGTGGTTAAGAGCACTGGCTGCTCTG
CCAGAGGAGCCATGTTTGGTTCCTGGCACCCCCATGGTGACTAGCAAGTA
TCTGTAACTCTAGTTCCAGGGGACTTCAGACCTTCAGGGGTGCTGCATAT
ACATGGTCCACAGGCACAAACGCAAGCAAAACACCCAGACCCCATAACAT
TAAATAAACAAATAAATATCAAAAATGGCATCCGAGTAACACTCTGATGC
CATGTAACACCACATAAGCAATATTTTTCTAAACAATAACATTGATGCAA
TGATTTTCTGCTACTATTTGACTTATATTCCCTCTGACTTTGTTCCCAGA
GTTATACTTGCTCACATTCAAAAAAAATCATCTGGGACCGAAGAAACGCT
CCATTGGTAAAGAGGTTGCCCCCCAGGCTAAAAAGAAAAGGTTTTTTCTC
TCCCCCCCTCTGCCAATTATGTCCCTTTATATCCCCACCATAAACGGCGG
GTCTTATAATTTTGGTCTCTCGCGGGTTTTTATTCCCCCCTAAATATTTG
GGTATTTCTCACTCCCTTTTTTT
NCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGACCCACTCTACAGTCTGCC
CCGCTTGCTCTGGCCTAAAGATTTACTTATTATTTTATCTAANNCACACT
GGTAGCTAACTTCAGACGCCCCACTTAATGAGGTGCGGATCCTATAGTGG
AGGTGTGGGAGCAGGTGGGGGCTGCGGGGATGGGAGGTGGAGGCAGACTG
TCGGAGGTGGGTAGATAACTAATTNNCCAACCTCCCTTCCCCCTTTCAAA
ATTTTAAANCCCTNAAATCTTTTTTCCNTTTCCAAAAANGCCCNANNTCC
CNAAAAACCCCCCAAAAANNAAAAAACCCCCCNCNAAATTCNNNNNTTTN
CAAAAACCCCCCAAAATCCCTCCCNNNNNNNNNNGCCCCCCCCTCCNNNN
NNNNTTTTCCNNNAAAAAATTCCCCCCCNNNNANAANANCCCNNNAAAAN
NNNNNCNNNNNNACACNNNNNNNTNNNANNNCCCNNNNNNCCCCCCCNNN
CCCCCCCAANNNCNNNNNTNNNNCCCNNNNNNNNNNNNCCNCCNNNCCCC
NCCCNNNNNNNCNNNNNNNNNNNTTTTTTTNNNNNCCCNNNNCCCNNNNN
NNNNNNNNNNNNNNNCNNNNCCCNNNNCCCCCNNNNCCCCNNCCCNCCCN
NNCCCCCCCCCCTTCTACTTCCTCTTCTTTTCTCTTTTTTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_j23.b1 MSMg01no468_j23.b1 CHROMAT_FILE:
MSMg01no468_j23.b1 PHD_FILE: MSMg01no468_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:54 2005
         (432 letters)



>mm_chr1_155438144_155438975
          Length = 832

 Score =  634 bits (328), Expect = 0.0
 Identities = 334/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacctgaacaaggacaagccaatcaatcgaggaggtctggggatggaacttaaaaggcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tacctgaacaaggacaagccaatcaatcgaggaggtctggggatggaacttaaaaggcct 277

                                                                       
Query: 61  tccgactagctgaggcgcgtcagtgtagctgccggtaggtttcttttccttggttttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tccgactagctgaggcgcgtcagtgtagctgccggtaggtttcttttccttggttttcca 217

                                                                       
Query: 121 taactatggcatctgatgaagagacagtttagtggttaagagcactggctgctctgccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 taactatggcatctgatgaagagacagtttagtggttaagagcactggctgctctgccag 157

                                                                       
Query: 181 aggagccatgtttggttcctggcacccccatggtgactagcaagtatctgtaactctagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aggagccatgtttggttcctggcacccccatggtgactagcaagtatctgtaactctagt 97

                                                                       
Query: 241 tccaggggacttcagaccttcaggggtgctgcatatacatggtccacaggcacaaacgca 300
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tccaggggacttcagaccaccaggggtgctgcatatacatggtccacaggcacaaacgca 37

                                               
Query: 301 agcaaaacacccagaccccataacattaaataaaca 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  agcaaaacacccagaccccataacattaaataaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)