AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAACATGCGC
GGAATTCTTAACCAGGTAACTTAACCACAGTATTTACATGAGGATTTAGA
GTCCAGTTCCCTGTTCTCATCAATTAAAACAGTATCAATAGAGGGGTCTG
AGACACTTGACATATAAATTTATCTTATGATAAGTACTTTGCGTCAACAT
CATTTACCATGACAAGAATAGTGTCTAGTGGCAAACATATTCTCAGGTGG
GAATCCGATTGGTCTCCAGAGTGCTATCTACCAACTTCCATTTGCAGCTT
ACTTTCCAGTTGCCAGTTACACAAACTGTTTTGGTGACATAAGGAAGTCT
CCATCCTCTATCAGAGGACGATGATTAAGTCATTAACAGGGAATATAAAA
CATCTGTGAAAGGATCCTAATCTCTCCCACATGTGAAATGGCTAAATTCT
TTCTCCCTGTGTCTCATGTGAAGAAAACTGAGTAAAATCTCATTGGACAG
CTTTTTGATTTCCTAAATATCTTCTGATACCATGTGTAAGAATATAAACA
GTTGCAAGTCTCACTTTTAACCTCATGTACATAAAATATTTGTCTTTCTA
CATTTTGGGTGAATATTGCTCACAAGAGAAGTGTAACGTTGTTATACTTC
AGCTTGTTAAATTCCGAGTATTTTTTTAAATTTAAAAATACAAGAGATCC
ACCTTCATTATTTTAAAATGTCCGATAACTACGTTTTTATAGGAAATAGG
ATTTTCTTTTCTTATGC

NNAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATT
TAATAATGGGGTCATTTGAATTTTTGGAGTTCAGCTTTTTGATCTATTTG
TATATATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATTCT
TTCCCAATCTGTTAGTGGCCTTTTTTTCTTGACAGTATCTTTTGAAAGGC
ATATATTCTATTCAGTAAAATATTCAAGTTTCCTATCATTCACATCAAGT
TGCTGATTATTCACAGACATACACAATTTGTTTTAATATAGTTTCACCAA
AGAATATAAAATATCATTTATTTTCCTTAGCAGAAAACGTTCATTCAGAT
TGTTATTACCTTTTACCCCTTTTTTGGCCACAAGGTATCTCAAGTAACTT
AGAATACACAACCAAAATTTCCACTAGCAGTTGAGTGAGATAGCAAAGTT
TTGGACTATCTGACTTCGATAAAAATTTCAACAATATTTTTTTAACAAAG
CATTCAATGACATGCATCAGAGGATTCGGGCCACATTATCATCAGAGCGA
GTTTGGTTTCTCTTTATGGGTCCAGGGGTTTCAAAGACAACCCTTTAAAT
ATCAGAAATTTTTGCCCCAAATTCTTTAATATAATGATCTTTGGCCCCCT
GTAAAAAAATAATTTTATTTTTTTTTCCACGGAATTCCTTGGCTGCCAAA
TATTTAATTTTTTCTCAGAATTC

Query= MSMg01no468_l11.b1 MSMg01no468_l11.b1 CHROMAT_FILE:
MSMg01no468_l11.b1 PHD_FILE: MSMg01no468_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:02 2005
         (259 letters)



>mm_chr1_25608137_25608795
          Length = 659

 Score =  485 bits (251), Expect = e-142
 Identities = 257/259 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacataaggaagtctccatcctctatcagaggacgatgattaagtcattaacagggaa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 459 gtgacataaggaagtctccatcctatatcagaggacgatgattaagtcattaacagggaa 400

                                                                       
Query: 61  tataaaacatctgtgaaaggatcctaatctctcccacatgtgaaatggctaaattctttc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tataaaacatctgtgagaggatcctaatctctcccacatgtgaaatggctaaattctttc 340

                                                                       
Query: 121 tccctgtgtctcatgtgaagaaaactgagtaaaatctcattggacagctttttgatttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tccctgtgtctcatgtgaagaaaactgagtaaaatctcattggacagctttttgatttcc 280

                                                                       
Query: 181 taaatatcttctgataccatgtgtaagaatataaacagttgcaagtctcacttttaacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taaatatcttctgataccatgtgtaagaatataaacagttgcaagtctcacttttaacct 220

                              
Query: 241 catgtacataaaatatttg 259
           |||||||||||||||||||
Sbjct: 219 catgtacataaaatatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no468_l11.g1 MSMg01no468_l11.g1 CHROMAT_FILE:
MSMg01no468_l11.g1 PHD_FILE: MSMg01no468_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:02 2005
         (453 letters)



>mm_chr1_25451550_25452402
          Length = 853

 Score =  845 bits (437), Expect = 0.0
 Identities = 449/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgtaccccatttaataatggggtcatttgaatttttggagttcagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgtaccccatttaataatggggtcatttgaatttttggagttcagctt 260

                                                                       
Query: 61  tttgatctatttgtatatattggatattagtcccctatcagatttaggattggtaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgatctatttgtatatattggatattagtcccctatcagatttaggattggtaaaaat 320

                                                                       
Query: 121 tctttcccaatctgttagtggcctttttttcttgacagtatcttttgaaaggcatatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttcccaatctgttagtggcctttttttcttgacagtatcttttgaaaggcatatatt 380

                                                                       
Query: 181 ctattcagtaaaatattcaagtttcctatcattcacatcaagttgctgattattcacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctattcagtaaaatattcaagtttcctatcattcacatcaagttgctgattattcacaga 440

                                                                       
Query: 241 catacacaatttgttttaatatagtttcaccaaagaatataaaatatcatttattttcct 300
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catacacaaacagttttaatatagtttcaccaaagaatataaaatatcatttattttcct 500

                                                                       
Query: 301 tagcagaaaacgttcattcagattgttattaccttttaccccttttttggccacaaggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcagaaaacgttcattcagattgttattaccttttaccccttttttggccacaaggta 560

                                                                       
Query: 361 tctcaagtaacttagaatacacaaccaaaatttccactagcagttgagtgagatagcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcaagtaacttagaatacacaaccaaaatttccactagcagttgagtgagatagcaaa 620

                                            
Query: 421 gttttggactatctgacttcgataaaaatttca 453
           ||||||||| |||||||||||||||||||||||
Sbjct: 621 gttttggacaatctgacttcgataaaaatttca 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)