BAC Information

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BAC

Clone NameMSMg01-468M14
Chromosome1 (Build37)
Map Location 191,651,446 - 191,651,692
singlet/doubletsinglet
Overlap genePtpn14
Upstream geneUsh2a, Kctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, LOC100042438
Downstream geneSmyd2, Prox1, LOC100039394, EG666975, Rps6kc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468M14.T7 (MSMg01no468_m14.b1)MSMg01-468M14.TJ (MSMg01no468_m14.g1)
ACCAG552177AG552178
length786813
length of high quality
(start - end)
180 (340 - 519)249 (72 - 320)
definitionCHROMAT_FILE: MSMg01no468_m14.b1 PHD_FILE: MSMg01no468_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:08 2005CHROMAT_FILE: MSMg01no468_m14.g1 PHD_FILE: MSMg01no468_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTGCATCTGCGCGGNA
ANNCNNNGNTTTTTTCTAGACACCCAGTGNNGAANGAGGNTATTTGATTT
TCTGGAGTCCATCTTCTTGAGTTCCTTATATATATTGGATATTAGGATTA
GGAATGGATACAGAAAACGTGGTACATTTACACAATGGAGTACTACTCAG
CTATTAAATAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTG
GAGGTTTTCTTCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACACAA
TATGTACTCATTGATAAGTGGTTACTAGTTTTGAAATTNAGAATACCCAA
GAAATAAGATACTATTTGCTAAACACATGAAACTCGAGAAGAACGAAGAC
TAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAATAAAACACCCAT
GGAAGGAGTTACAGAGACACAGTTTGGAGCTGAGACAAAAGGATGGACCA
TCTACAGACTGCCATATCCGGGGATCCCTCCCATAATCAGCTTCCGAACG
CTGACACCATTGCATACACTAGCATGATTTTGCTGAAAGGACCCAGATAT
AGCTGGCTCTTGTGAGACAATGCTGGGGCCTAGCTCACTCTTATACGCAT
GCCCACACCCCCTCTTTTTTTTTTTTTGTTCCCCAGGCCCCCCTTTGGTT
GCATCTATAGTCATTATCCCCGTGTTCTACTCACAACCTGCTATCTTTAT
CGGCTGGAATCTAAATTTTGTCCCTTTCCGTTATTG
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAAATTCAACGGGCTGAACCGTCATACCCTGACTG
AGAACTAGTGTCCAATAAAAGGTGACTGACTGCTTAAACAAAAAAAGCCA
AGAGACATGTTGAAGCTGTCATGTAGTCTACAGTGGAATGCCTGCTTCCT
TCTGGTGGGATGACTGCGGTCAAAGGACAGTCATCAGTGTACCCTTGTAC
ACCTTGTTTGTTTGTTTTTTGTTTTGTTCAATTGTTTTATCTTAAATCCT
GACCTGGGTGATAGACAGTTGGTAATGAAGTTGTACAAGAACTGGGATCG
TCATGTTTACCAAATCAGGTGCCATCCCATATACCTAGAAGTACAGTCAG
GAGTTGACCTGGGGTGGGACCACGTGCCCCTCATGGGTTAGGAAAGCCTT
GGAGATGACTGGTGCAGCGAGGACAGTGAGGGGACAACATAATTTGGGAA
ACAGTTGCAGCTACTCTTGCTATCCCCTGCCTCTTGCCAGCCGAATTCTG
TGCCTCAAAACCCCTTTTCCCTGTGAACTTCTAATATCTTATTTATGTCA
CGTCTCCCTATTTTCTTTGTTTCTAACAACAACTTTCCAATTCTCTACCC
TATATATTTCCATTCATATCCTTTTCTTTTATCTTAACCAACCTCTCCCC
CACTTACTTATTTTCCATGTCTCCCAATCCCTTCTCTTTTTCTATCTCCT
CATCACCTCCATCTCTCACCCNTTCCCTTTTCTTCGCCTCCTCCCTTTCC
TACACTCCTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_m14.g1 MSMg01no468_m14.g1 CHROMAT_FILE:
MSMg01no468_m14.g1 PHD_FILE: MSMg01no468_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:08 2005
         (249 letters)



>mm_chr1_191651246_191651894
          Length = 649

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacgggctgaaccgtcataccctgactgagaactagtgtccaataaaaggtgactgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacgggctgaaccgtcataccctgactgagaactagtgtccaataaaaggtgactgact 260

                                                                       
Query: 61  gcttaaacaaaaaaagccaagagacatgttgaagctgtcatgtagtctacagtggaatgc 120
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 261 gcttaaacaaaaaaagccaagagacacattgaagctgtcatgtagtctacagtggaatgc 320

                                                                       
Query: 121 ctgcttccttctggtgggatgactgcggtcaaaggacagtcatcagtgtacccttgtaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ctgcttccttctggtgggatgactgcggtcaaaggacagtcatcagtgtacctttgtaca 380

                                                                       
Query: 181 ccttgtttgtttgttttttgttttgttcaattgttttatcttaaatcctgacctgggtga 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ccttgtttgtttgttttttgttttgttcaattgttttgtcttaaatcctgacctgggtga 440

                  
Query: 241 tagacag 247
           |||||||
Sbjct: 441 tagacag 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)