Query= MSMg01no468_p21.b1 MSMg01no468_p21.b1 CHROMAT_FILE:
MSMg01no468_p21.b1 PHD_FILE: MSMg01no468_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:24 2005
(414 letters)
>mm_chr1_195027866_195028680
Length = 815
Score = 661 bits (342), Expect = 0.0
Identities = 400/434 (92%), Gaps = 26/434 (5%)
Strand = Plus / Plus
Query: 5 gaattctgggccatta-c-ataccttgccacttctgtggtaagacccaggagggatgttt 62
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggccat-atctataccttgccacttctgtggtaagacccaggagggatgttt 263
Query: 63 ctcataccatctagctgtttggagtctctttttcccaatactggcattgggtagagtctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcataccatctagctgtttggagtctctttttcccaatactggcattgggtagagtctc 323
Query: 123 ctgtggtctgaaggatctgtgtgttttgtggagttccagatccttgagggcatcctggat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgtggtctgaaggatctgtgtgttttgtggagttccagatccttgagggcatcctggat 383
Query: 183 tcatgtctttatgagtcagtgtggaggggtgaagtatggagggctagagggcagaaggca 242
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 tcatgtctttatgaggcagtgtggaggggtgaaatatggagggctagagggcagaaggca 443
Query: 243 ggtagccaaaagaatctgaaaaatcccagtgaattgttttatgaaattttgggaaaaatt 302
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 444 ggtagccaaaagaatctgaaaaatcccagtgaattgaactaagaaattttgggaaaaatt 503
Query: 303 aaagagaacttatacattaaaaagaaacttacaaatgggaaatcccagagcaactcagga 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaagagaactgatacattaaaaagaaacttacaaatgggaaatcccagagcaactcagga 563
Query: 363 tagataaacaggaaactg-----------------------ctctggaaccttctgaaca 399
|||||||||||||||||| ||||| |||||||||||||
Sbjct: 564 tagataaacaggaaactgagtttgtacaagttcaaggactgctctgcaaccttctgaaca 623
Query: 400 agccactcagtatg 413
||||||||||||||
Sbjct: 624 agccactcagtatg 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 815
Length adjustment: 9
Effective length of query: 405
Effective length of database: 806
Effective search space: 326430
Effective search space used: 326430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no468_p21.g1 MSMg01no468_p21.g1 CHROMAT_FILE:
MSMg01no468_p21.g1 PHD_FILE: MSMg01no468_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:24 2005
(245 letters)
>mm_chr1_195205977_195206621
Length = 645
Score = 429 bits (222), Expect = e-125
Identities = 240/246 (97%), Gaps = 2/246 (0%)
Strand = Plus / Minus
Query: 1 gccaaaccacaccctcaagctacagttctggtacttgcctgtctcttattcttttgttct 60
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gccaaaccacacccccaagctacagttctggcacttgcctgtctcttattcttttgttct 386
Query: 61 gtgagataataaagaatcaatttttatatgctaggcatttaaagacaaac-aaggtatgt 119
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 385 gtgagataataaagaatcaatttttatatgctaggcatttaaagac-aactaaggtatgt 327
Query: 120 actctgggggttcacatttttataaaatcaaactttaaagtttcgagtatgaagaaagta 179
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 326 actctgggggttcacatttttataaaaacaaactttaaagtttcgagtgtgaagaaagta 267
Query: 180 caaaacatttcccagtgctgcagagaaagattagcttgttatggagatgtccagagtaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaaacatttcccagtgctgcagagaaagattagcttgttatggagatgtccagagtaag 207
Query: 240 gcccga 245
||||||
Sbjct: 206 gcccga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
