Query= MSMg01no469_d21.b1 MSMg01no469_d21.b1 CHROMAT_FILE:
MSMg01no469_d21.b1 PHD_FILE: MSMg01no469_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:45 2005
(559 letters)
>mm_chr1_178458512_178459473
Length = 962
Score = 926 bits (479), Expect = 0.0
Identities = 538/561 (95%), Gaps = 9/561 (1%)
Strand = Plus / Minus
Query: 5 gaattctcc----acattatcacctattgccattattgctcagcacttgactgctattaa 60
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattctccacaaacatt---acctattgccattattgctcagcacttgactgctattaa 706
Query: 61 tgtcctttctcttgactttcacagagagccattgtgtacttttattcccagcttttgcct 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 705 tgtcctttctcttgactttcacagagagccattgtgtaattttattcccagcttttgcct 646
Query: 121 cacttaggctttgaaacagagttgtatacgtgagagctcatggcttggatgtcacgtgac 180
||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 645 cacttgggctttgaaacagagttgtatacgtgagagctcacggcttcgatgtcacgtgac 586
Query: 181 tataacatcatacgattcagataagactgatgggcctctgggcaggtaatgttagctttg 240
||| |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 585 tatgacatcataagattcaggtacgactgatgggcctctgggcaggtaatgttagctttg 526
Query: 241 acagaacaagaagcatcaagaaaattctgattcccctcttcagtgttgctgagttcattg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 acagaacaggaagcatcaagaaaattctgattcccctcttcagtgttgctgagttcattg 466
Query: 301 gagcctggtgaggctcgtgtataatttgacaagagctgcattctacaaattctggaattc 360
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct: 465 gagcctggtgaggctcgtgtataatttgacaagagctgcgtcctacaaattctggagttc 406
Query: 361 aagttcccacagctgttcccc-gttctcatctttgtactcttcacaggggctggaggaaa 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aagttcccacagctgttcccctgttctcatctttgtactcttcacaggggctggaggaaa 346
Query: 420 ttttgctatcttgttctagtttcactccttaatataagaaatagatcatattaaataaga 479
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 345 ttttgctatcttgttctagtttcactccttaatataagaaatagatcatgttaaatcaga 286
Query: 480 attttaattacttttatatcaaggttgacaaattttatcagcttgcttttatt-gtcatg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 285 attttaattacttttatatcaaggttgacaaattttatcagcttgcttttattagtcatg 226
Query: 539 agaaattggtatcctttgcag 559
|||||||||||||||||||||
Sbjct: 225 agaaattggtatcctttgcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 962
Length adjustment: 10
Effective length of query: 549
Effective length of database: 952
Effective search space: 522648
Effective search space used: 522648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_d21.g1 MSMg01no469_d21.g1 CHROMAT_FILE:
MSMg01no469_d21.g1 PHD_FILE: MSMg01no469_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:46 2005
(466 letters)
>mm_chr1_178302228_178303094
Length = 867
Score = 895 bits (463), Expect = 0.0
Identities = 466/467 (99%), Gaps = 1/467 (0%)
Strand = Plus / Plus
Query: 1 tggggactgttcaggtttgttgccgaaccctagatac-cacagagaagagagttgagagt 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tggggactgttcaggtttgttgccgaaccctagatacacacagagaagagagttgagagt 260
Query: 60 tctgtgctttggtctttgcttcattgctccattagttgcttaagcatcatcatgaccaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgctttggtctttgcttcattgctccattagttgcttaagcatcatcatgaccaaa 320
Query: 120 atgcctgatggaaatcacttataaggaaaattgttttcatctatgacttcagaggataca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcctgatggaaatcacttataaggaaaattgttttcatctatgacttcagaggataca 380
Query: 180 gtacgcactttattggccttatgtatttgagtagaacatcatggtgacaacacatggcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacgcactttattggccttatgtatttgagtagaacatcatggtgacaacacatggcaa 440
Query: 240 aggatagctgttcacgtagtgacaaactgaaagcagagggttctccaaggatcctcccct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggatagctgttcacgtagtgacaaactgaaagcagagggttctccaaggatcctcccct 500
Query: 300 aggaatctacctcatccagctaagttttagcagccaaaggtcccagaacctctcaaaaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaatctacctcatccagctaagttttagcagccaaaggtcccagaacctctcaaaaca 560
Query: 360 gcactaacagtggggaccaagcatacagatcaagagcctgtggggggacagttcaagttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcactaacagtggggaccaagcatacagatcaagagcctgtggggggacagttcaagttc 620
Query: 420 aaaccatgacagttcaggtttaaatcacaacaattgttgtccatggt 466
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaccatgacagttcaggtttaaatcacaacaattgttgtccatggt 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space: 390792
Effective search space used: 390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
