Query= MSMg01no469_e07.b1 MSMg01no469_e07.b1 CHROMAT_FILE:
MSMg01no469_e07.b1 PHD_FILE: MSMg01no469_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:48 2005
(509 letters)
>mm_chr1_25732764_25733672
Length = 909
Score = 818 bits (423), Expect = 0.0
Identities = 480/521 (92%), Gaps = 37/521 (7%)
Strand = Plus / Minus
Query: 6 aattcataat---atccatatcttataagcagacattttattatattatgactaattttc 62
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 aattcataataaaat--atatcttataagcagacattttattatattatgactaattttc 840
Query: 63 acatttatacttcctaattattaacatgatatttgcttcatggagtatgccataatttaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 acatttatacttcctaattattaacatgatatttgcttcatggagtatgccataatttaa 780
Query: 123 agtaaccctggttaagaatggtttagtaatgactcctaaaagcactcacatgacagaaag 182
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 779 agtaaccctggttaagaatggtttaataatgactcctaaaagcactcacatgacagaaag 720
Query: 183 agacaactcactcctgcagcttgtcatctggccttcatgtgtgtactgtgacacatgctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agacaactcactcctgcagcttgtcatctggccttcatgtgtgtactgtgacacatgctt 660
Query: 243 tcgtggcacacatgtgcacacacacacacacatacacacacacacacacacacacacatt 302
|| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 659 tcatggcacacatgtgcacacacacacacaca------------------cacacacatt 618
Query: 303 gatatatagaaacataataaataagcttatggtctattttcatttgttattattttaaac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gatatatagaaacataataaataagcttatggtctattttcatttgttattattttaaac 558
Query: 363 tgttatagatagaattcttactaatacataacagtatttgcttctttttttcactgtt-- 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgttatagatagcattcttactaatacataacagtatttgcttctttttttcactgttat 498
Query: 421 ------------ttaattggtgctggcttacaggttctgaggttcagttcagtatcatca 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaatgaaaacatttaattggtgctggcttacaggttctgaggttcagttcagtatcatca 438
Query: 469 tggttagaagcatggcagtgtccaggcaggcaatggaggag 509
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 437 tggttagaagcatggcagtgtccaggcaggcattggaggag 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_e07.g1 MSMg01no469_e07.g1 CHROMAT_FILE:
MSMg01no469_e07.g1 PHD_FILE: MSMg01no469_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:48 2005
(444 letters)
>mm_chr1_25571255_25572100
Length = 846
Score = 752 bits (389), Expect = 0.0
Identities = 432/447 (96%), Gaps = 4/447 (0%)
Strand = Plus / Plus
Query: 1 tttgctctcagggaggcagaggtggaagaggccagtctttaagctcattcggcttccagt 60
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttgctctcaaggaggcagaggtggaagaggccagtctttaagctcattgggcttccagt 260
Query: 61 tctgatttcagacatgagacttacttattcctgtgaagaatttattctgttgctaagatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgatttcagacatgagacttacttattcctgtgaagaatttattctgttgctaagatt 320
Query: 121 taaaataaatgagtttcatgtggtattttgtttgtttatttgaaatagatccgtaatata 180
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 321 taaaataaatgagtttcatgtggtattttgtttgtttatttggaatagatttgtaatata 380
Query: 181 tagctcagttggacttggaatattcagtccttctggtccacccccacaaatggtacaact 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tagctcagttggacttggaatattcagtccttctggtccacccccagaaatggtacaact 440
Query: 241 ataggtatataccaatatcccagttatatttacagtcttcttgaagaaaattcacttcat 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataggcatataccaatatcccagttatatttacagtcttcttgaagaaaattcacttcat 500
Query: 301 ctgttttaagttgtgtgcctgtatttccaccat-gaacaaccattcaaattatacagt-- 357
|||||||||||||||||||| |||||||||| | |||||||||||||||||||| |||
Sbjct: 501 ctgttttaagttgtgtgcctatatttccacc-tcgaacaaccattcaaattataaagtgt 559
Query: 358 ttaaattattcaaatatcttgctaattttgaggagaactggattatcatcttcatattaa 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 560 ttaaattattcaaatatcttgctaattttgaggagaactggattttcatcttcatattaa 619
Query: 418 ccaagaaatggaagtagaaattaagtc 444
|||||||||| ||||||||||||||||
Sbjct: 620 ccaagaaatgaaagtagaaattaagtc 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 846
Length adjustment: 10
Effective length of query: 434
Effective length of database: 836
Effective search space: 362824
Effective search space used: 362824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
