BAC Information

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BAC

Clone NameMSMg01-469F09
Chromosome1 (Build37)
Map Location 27,012,934 - 27,013,380
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik
Downstream geneLOC677427, LOC100040952, EG433281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469F09.T7 (MSMg01no469_f09.b1)MSMg01-469F09.TJ (MSMg01no469_f09.g1)
ACCAG552596AG552597
length759775
length of high quality
(start - end)
408 (71 - 478)447 (75 - 521)
definitionCHROMAT_FILE: MSMg01no469_f09.b1 PHD_FILE: MSMg01no469_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:53 2005CHROMAT_FILE: MSMg01no469_f09.g1 PHD_FILE: MSMg01no469_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTATACXXXXXXXXXXXXXXXXXXXXXXXATTCAGAAGAGGATCCGC
GGAATTCTCTTTTTCCCAATACCGAAAGGCTGAGAAACACCTGAAAAAAA
TGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAGAACAACCCTGAG
ATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACTCAGAGGATCCCGCAATACCTCTGTTG
GGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGTCCCTCAACAGAGGAATGGATACTAAAAATGTGGTACATTTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGG
CAAATGGTTGGACCTGGAGGGTATCATCCTGAGTGAGGTAACCCAATCAT
AAATGAACCCACATGAAATGTACTAAACTGATAACTGTATACTAATTCCT
CACTCTTAGCATTGTGAGCAATAACGTACAATACGTTACACCTATGACCC
CGAAGAAGAACGAATACCCCACTGTGTGCTCTTCTGCTCTTCTTTAGAAC
TGGTAATCT
TTCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTGGCTGCTTTCAGTAATGTCTTG
TGGCACTAACTGATCCAGCTAAACCAAAATTCTTTGTGGATGAAGATTTG
GGGTGTAAGTCTGAGATCTGTTTACAATTTAAATGTCCCAGTTATCACCC
AGATACTTTCTGATGAATTTAGCAGGTTAAGTTCCTTACCAGTATAGACA
CCAATTTTTCCTAATATCTTTCTCTACTTGTCCTTTTTTGCCAGAACTCC
ACTTGTTCTTTACCTCTTTTTTTTAACTTTAACTTCACTTGCTATTTCAA
ATAAATAGTATTTAGGTGGACATCACAAGTTTGTAGTTTTGTAATGAATT
TCAGCGTCTGAGTAAATATCTCAAGAATTCCAGAACAGATTTTTAAGTCA
ATAACTGTTTCTTTCCCAATGTTGTATTTCCCTACAACAGAGTGATGGGA
GCCATAAGTTTCTGCTCTTCTTGAAAGGCCAACTCATGCAGCAAGAAATC
TGTCTTTTAAATGAATGTCCAGTCTTCTAGTTCCACCAATAAACTAAATC
TTCTTGTTATAACTTGTTCCAAAAGAAACAAGCCTTATAACATTTAGCAT
CTTGTCAACTCTGCGATATATTTCTATACAGAACACGAAACTCTCTATAT
CCGTACATTTTGGAAAAGGGTGCATTTATGTATGCAAAAAGGCTTTTTGC
CCCGCGTTTTTATCTCCTGGCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_f09.g1 MSMg01no469_f09.g1 CHROMAT_FILE:
MSMg01no469_f09.g1 PHD_FILE: MSMg01no469_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:53 2005
         (447 letters)



>mm_chr1_27012734_27013580
          Length = 847

 Score =  803 bits (415), Expect = 0.0
 Identities = 439/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggctgctttcagtaatgtcttgtggcactaactgatccagctaaaccaaaattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttttggctgctttcagtaatgtcttgtggcactaactgatccagctaaaccaaaattctt 588

                                                                       
Query: 61  tgtggatgaagatttggggtgtaagtctgagatctgtttacaatttaaatgtcccagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgtggatgaagatttggggtgtaagtctgagatctgtttacaatttaaatgtcccagtta 528

                                                                       
Query: 121 tcacccagatactttctgatgaatttagcaggttaagttccttaccagtatagacaccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tcacccagatactttctgatgaatttagcaggttaagttccttaccagtatagacaccaa 468

                                                                       
Query: 181 tttttcctaatatctttctctacttgtccttttttgccagaactccacttgttctttacc 240
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cttttcctaatatttttctctacttgtccttttttgccagaactccacttgttctttacc 408

                                                                       
Query: 241 tcttttttttaactttaacttcacttgctatttcaaataaatagtatttaggtggacatc 300
           |   | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 407 taaatgttttaactttaacttcacttgctatttcaaataaataatatttaggtggacatc 348

                                                                       
Query: 301 acaagtttgtagttttgtaatgaatttcagcgtctgagtaaatatctcaagaattccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acaagtttgtagttttgtaatgaatttcagcgtctgagtaaatatctcaagaattccaga 288

                                                                       
Query: 361 acagatttttaagtcaataactgtttctttcccaatgttgtatttccctacaacagagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 acagatttttaagtcaataactgtttctttcccaatgttgtatttccctacaacagagtg 228

                                      
Query: 421 atgggagccataagtttctgctcttct 447
           || ||||||||||||||||||||||||
Sbjct: 227 ataggagccataagtttctgctcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)