BAC Information

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BAC

Clone NameMSMg01-469N09
Chromosome1 (Build37)
Map Location 164,364,357 - 164,364,551
singlet/doubletsinglet
Overlap geneDnm3
Upstream geneTnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, LOC100039703, Dnm3os
Downstream gene5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469N09.T7 (MSMg01no469_n09.b1)MSMg01-469N09.TJ (MSMg01no469_n09.g1)
ACCAG552978AG552979
length770786
length of high quality
(start - end)
195 (122 - 316)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no469_n09.b1 PHD_FILE: MSMg01no469_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:33 2005CHROMAT_FILE: MSMg01no469_n09.g1 PHD_FILE: MSMg01no469_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATAACTTGTGGCGTTAAAAGAANACAATTCAAAAACGTGCGNGGAA
NNCCCTATTTACAGACATCATGCATNCTCCCATTTAATGTCCATGGTATA
ACCGGAGATCTGTCTCCTAAACCCTATTGTAAATATGATGTTACCCTTCT
TATTTTTCAACACACTTCACAAGCAAAATTCTTTAGTGATAAAGTAAAAG
AAAAATTTCTACTACTTAGCTTTGCCTAGATACTTATTATATTATAATAT
TTGAACTGATTTCCAGCTATAGGTAACAGAAGAAGAAAAATATCAAAGGT
TTGAAATGAAAACTTGNATGNCTTGAGGAACATGGCCTGGCTGTAGGAGT
CTTAATACGTAACGAAACAGTCGTTGAGTCCCATGACTTTATGGATAAGT
GCACCATTTCCAGTACTCTGACTCCCTAATGGGGGCTGTTTCTCGCTTTG
CAGAAGGTGACCCACTCATCATCTTTCCCCTTCACAGAGCAATGGTTTCT
CTGATAATTAATCAGCCTGACTAACTGACCTTTTCCTGTCCTTGTGCTTA
ATGATAATGCTAGTCTCTCATTTACACATCACATTTACAATATAGTTCCA
TTATAACCCCAGCGAAATAACATTTCTGTGCATACGTGTTGTCGCTTCTT
TTCCCTGCTTTTCTTATTTTGCAGGCAAAGGAAATACAAATTCCGCTCTG
TGCGCGTAAATTAATTCTTATCTCCAGCACTTTTTCGTTACCTGTAATAA
TGTTCCACCCTGTCGGTTTA
TCGATGATTGTGGGAAGTANGGGAGGACGCCTGTXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACCCTCACATCAGGTAGAGACTT
AGGCTATTGATTGGTAGGTGCACTTATCCAGAGGGAGTCTGTTTGGTAGA
TCTAAGTGCATTTCTTGGAGTTTATAGGTTTATAAGAGAGATGAAGTTGG
TAACAGCATGAACAGTCTTTAAGGTGAGCTTAGGAAAGACAAAAACCTTT
TGTGGAGCAGAAGGAACAAGAAGGACTCTTTTTTTTTTTGTCTAGGAGAC
TGAATATATACCAATTTTTCTTTGTGAGAAGCATTTTGAAGTATACAATT
AAAATGTATACTATAAAAAACAGGAAACTTGAAAATCTGATGAACTTGTA
AATATGATAATTGATCACATAGTTTAGCAGGAGAAACACCTTAAGTCTGC
GGTTAAAAGATAACTAATGGAAACTTAAAATTTGAACTTGTGATTATCAA
ACGTGGATCATATCGCGGAATGTTTTATTTATAGCTAGGCTAATTTATAC
CAACTATTTTGGCTACTATTTAATATGTTGGCCCCTTCGTATGAAATACC
TTGCCCCCTTTTCTCCTTTGGCTATTGTTTCCCCCTTTATTTATTCCCTT
ATCCCTCTTCTCTTCTTCCCCCCTACCTCTTCCTTTCGCCTCTCCTCCCC
CCTTCTTTTCCTTTGCCCTTTTCCTATCCCTTTTTTTTCTTTTCCTTACT
CCCCTCTCCCCGCCTTTTCTTTCCTCCTTTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_n09.b1 MSMg01no469_n09.b1 CHROMAT_FILE:
MSMg01no469_n09.b1 PHD_FILE: MSMg01no469_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:33 2005
         (195 letters)



>mm_chr1_164364157_164364751
          Length = 595

 Score =  362 bits (187), Expect = e-104
 Identities = 193/195 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctattgtaaatatgatgttacccttcttatttttcaacacacttcacaagcaaaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctattgtaaatatgatgttacccttcttatttttcaacacacttcacaagcaaaattc 260

                                                                       
Query: 61  tttagtgataaagtaaaagaaaaatttctactacttagctttgcctagatacttattata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagtgataaagtaaaagaaaaatttctactacttagctttgcctagatacttattata 320

                                                                       
Query: 121 ttataatatttgaactgatttccagctataggtaacagaagaagaaaaatatcaaaggtt 180
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttataataagtgaactgatttccagctataggtaacagaagaagaaaaatatcaaaggtt 380

                          
Query: 181 tgaaatgaaaacttg 195
           |||||||||||||||
Sbjct: 381 tgaaatgaaaacttg 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)