BAC Information

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BAC

Clone NameMSMg01-470B13
Chromosome1 (Build37)
Map Location 49,414,314 - 49,414,878
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik
Downstream geneLOC627430, LOC100041981, EG666962, EG666970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470B13.T7 (MSMg01no470_b13.b1)MSMg01-470B13.TJ (MSMg01no470_b13.g1)
ACCAG553178AG553179
length751771
length of high quality
(start - end)
565 (82 - 646)185 (76 - 260)
definitionCHROMAT_FILE: MSMg01no470_b13.b1 PHD_FILE: MSMg01no470_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:53 2005CHROMAT_FILE: MSMg01no470_b13.g1 PHD_FILE: MSMg01no470_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCCAAGTCTGTGTACTCTCAGCACAGGCCAGATCCTCAACAATATCCA
TGGCTTGGAGGAACATGATAATCTGAAGTTTCCATCAGAGACATGAGCCT
GCACTGAATCCAATCTGTGTATTATTTAGAATTAAACAGTACTTTAATGA
GAGGGAAGAAAAAAGGAGTTGGAGATCTGAAGAGTGCTTTGACATTAGAC
ATGGAGATTCCGACTTTCGAGTTTGTCTAGCTGGTTTTGATTTTGCTTTG
ATCCACTATTTCCTCACTATTATATTTTCAATGGTAATGTACTTTTTTGT
GCTGTTAGAGGTATTTTATCTCTTTTGCTTTTTAAGGTGATTACAATTAA
GAGATAATACTAATTTCAGAAGAGATGTTGAACTTTGAAATGGTAACATT
GAGATTGTTATAGACTGTGAAGACTTTTGAAGTTTGACTAAAAGTATTTT
TCATTATGCTACGGATAGGTTTGCCCCATAAATTCACATGTTTAAATAAG
CCTATGAGTACCAGGGAGTGGAATGTGGTGATTTGAATATGCTTGGCCTG
TAGGAAGTAGTACTATTACGAGCTATGACCTTGTTGGAATAGGTGTGATC
TTGTTGGAAGAAGTGTGTCACTGTGTAGGCCGGCTTTTATGGCTCCTAGT
ATCAACTCCGCCCAGTGTAGAAGACTGAATCTCTTCCTACATGGCTATGG
G
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGATAACAGCTGGGGTCAACAAG
GGCTCCACCTAAGATTCACTAATCTTAGAAGCCAGGGTCAAGGGCTTCGC
ACCCTTGCCATAGTTCCTATTTTAGTCTCTTGTATAGTCCACCTTCCCCT
TAGGCCATTATAAATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTNTNNNNNNNNNNTNTTTTTTTTTTNTTTTTTTTTTTTNTTT
TTNNNNNNNTNNNTTTTTTTTTTTTNNNCCCNCNCNCNCCCCCCCTCCCC
CTTTTTTTTCTTCCCTCTCTTCCCCGTTCCTTTTCCCCCNTTTCCCCTCC
TTTTTCCCCCCCTCCCTCCTCTCTCCTTNTTTTTCTTTTTTCCTTTCTCC
CCCTTTTCCCTTCCCTTTCCCTTCCNTTCTCTTTTTCTTCTCCCCTCTCT
TCTTTCCTTTCTTTTTCTTCTCCTCCTCCTCCTTTCCTCTTCTCTTCCTT
CTCTCTCTTCCCCCTCCCTCCCTCTTTTTCTTCTCCTTCTTCCTCCCCCC
CCCCCTCTTTCTCNTCTCTTTTTCCTTCTCTTTTCCTTTTCTTCCCTCCT
CCCTCTTCTTTTTTTTTTTTTCTCCTCTCTCCTTCCCCCCCTTTTCTCTT
CTTCTCCTTCCTTTCCTGTTTCCCTTCCCTTTCCCTTCGTCTGCTGCCTC
CTTTTCCTTGCTCTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_b13.b1 MSMg01no470_b13.b1 CHROMAT_FILE:
MSMg01no470_b13.b1 PHD_FILE: MSMg01no470_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:53 2005
         (565 letters)



>mm_chr1_49414114_49415078
          Length = 965

 Score = 1054 bits (545), Expect = 0.0
 Identities = 560/565 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatcctcaacaatatccatggcttggaggaacatgataatctgaagtttccatcagaga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agatcctcaacaatatccatggcttggaggagcatgataatctgaagtttccatcagaga 260

                                                                       
Query: 61  catgagcctgcactgaatccaatctgtgtattatttagaattaaacagtactttaatgag 120
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 catgagccttcactgaatccaatctgtgtattatttggaattaaacagtactttaatgag 320

                                                                       
Query: 121 agggaagaaaaaaggagttggagatctgaagagtgctttgacattagacatggagattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggaagaaaaaaggagttggagatctgaagagtgctttgacattagacatggagattcc 380

                                                                       
Query: 181 gactttcgagtttgtctagctggttttgattttgctttgatccactatttcctcactatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gactttcgagtttgtctagctggttttgattttgctttgatccactatttcctcactatg 440

                                                                       
Query: 241 atattttcaatggtaatgtacttttttgtgctgttagaggtattttatctcttttgcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattttcaatggtaatgtacttttttgtgctgttagaggtattttatctcttttgcttt 500

                                                                       
Query: 301 ttaaggtgattacaattaagagataatactaatttcagaagagatgttgaactttgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaggtgattacaattaagagataatactaatttcagaagagatgttgaactttgaaat 560

                                                                       
Query: 361 ggtaacattgagattgttatagactgtgaagacttttgaagtttgactaaaagtattttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtaacattgagattgttatagactgtgaagacttttgaagtttgactaaaagtattttt 620

                                                                       
Query: 421 cattatgctacggataggtttgccccataaattcacatgtttaaataagcctatgagtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattatgctacggataggtttgccccataaattcacatgtttaaataagcctatgagtac 680

                                                                       
Query: 481 cagggagtggaatgtggtgatttgaatatgcttggcctgtaggaagtagtactattacga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 cagggagtggaatgtggtgatttgaatatgcttggcctgtaggaagtagtactattagga 740

                                    
Query: 541 gctatgaccttgttggaataggtgt 565
           |||||||||||||||||||||||||
Sbjct: 741 gctatgaccttgttggaataggtgt 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)