BAC Information

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BAC

Clone NameMSMg01-470H06
Chromosome1 (Build37)
Map Location 122,782,572 - 122,782,990
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
Downstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470H06.T7 (MSMg01no470_h06.b1)MSMg01-470H06.TJ (MSMg01no470_h06.g1)
ACCAG553452AG553453
length795772
length of high quality
(start - end)
104 (84 - 187)419 (78 - 496)
definitionCHROMAT_FILE: MSMg01no470_h06.b1 PHD_FILE: MSMg01no470_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:22 2005CHROMAT_FILE: MSMg01no470_h06.g1 PHD_FILE: MSMg01no470_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGATCTATAATTTGCGGGCGCTAAACGAATCACTAAATCGACAGCAGCC
GCGGAANTCCTAGTATTTCCTAAATATTTTGGGCATATTACTAAAAACAT
TGCATACTGGGACTGTGCAGATTGCCCTGTAGGCAAAGGTATCTGCTGAC
AAGTCTGAGGACCTGAGTTCATTTCCCAGGTCCCGTACACTAGAAGGAGA
GAATTCCTGCAGGCTGTCCTCTGACCTGCTGTCACTGCATGTACACACAC
ACAGACTCTCAGACACATAGACACACACACACACACACACACAGACACAC
AGACACACACACAGACACACAGACTTTTTTTTTCAGACATAGACACACAG
ACACAGACACATAGATTCTCCCTCACTGACACACACACGCAGACACCCTA
GACCCACGACCCCACACTTCTACCCCCCCCCCCCGACCCAGACACTCTCA
TACACACTCTTTCCCTCGACACCGATACTTTTATCTTGACTCCAACGACT
CCCTTCCCTCCGACCCCCTTTCCCCCGCCCCCCCCTTACTCTCTTCCCCT
ATCCTCCCTCTTCCCTTCTCTCCGCTCCCCGACCCCCCTTTTTCTTCTTT
CCTCTCTCTTGTACTCTTTTTTTCTCCCCCCTCCCTTTCCTACTACCCTC
CTACCCCTCCCTCTTTTTCCCTCCCTCCCCCTCCTTCCCTCCGGTCCCTC
CCTTTCCCTCGCCTCTATTTATCCCTTTTTCTCCCCCCCCCTCTTTCTCT
CCCTCACCCTCCCCCTCCCCTCCCTCCCCCCTTTTCCCTCCCCCC
NTTCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGACGGGTTTATGCGCAGCGT
GCTTCTCATAAAACCTTATTTGAACATTTGATTCCAGTTTACATTTTATT
AACAAAGCTCTCATTTTTCACTCGGAACAAGGAGGCAGAGGGAGGAGACG
TCCATTTCTGAAACTTCAAATCTGTGTCAAAAAAAACTTACAAGATGGCC
ATAGAATGGACAAGACAGGGACTGCCCTGAGACAGTTACAAAAAAATGAA
AGAAAGAAAAAAAGATAGAAAGAAAACCTTAATTAGGATGCAATCCTGGT
TATTTTAAGCCATACAAAAGAATTTGGCACATAATAGAGTGGCTGTTTCT
TCCAGTTCATATGATAAAACTCTCACCAGTCTTAAAATGACAGATGTAAT
ATTACCTTTAATAAGTGTCTACCGATGCATGCAAATTGAATTAGATAGTG
GGAGTACAAATTTGTCCGATAATTAAGATAAAATTTCATGTCAGTTCAAA
CCCCGGTGTATATTAGTAACACTGTATATTTCTTTGCTCTGCTTTCTACT
AGCTACCTCTTAAAGTGGCTTCCTTGATCTCTTGTATCGGTTCCCGATTC
CATGTTTCATTACCCCTGTTTTCTCACTTCCCTTTATTTACTATCTGCTG
GGACACTTTGTCATATTTTATTACCTGCCCCCCGTCTCATGTGCTTCTTA
CCCCATTCGTATCCTATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_h06.g1 MSMg01no470_h06.g1 CHROMAT_FILE:
MSMg01no470_h06.g1 PHD_FILE: MSMg01no470_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:22 2005
         (419 letters)



>mm_chr1_122782372_122783190
          Length = 819

 Score =  766 bits (396), Expect = 0.0
 Identities = 414/420 (98%), Gaps = 2/420 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagacgggtttatgcgcagcgtgcttctcataaaaccttatttgaacatttgattccag 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagacgggtttatgtgcagcgtgcttctcataaaaccttatttgaacatttgattccag 260

                                                                       
Query: 61  tttacattttattaacaaagctctcatttttcactcggaacaaggaggcagagggaggag 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tttacattttattaacaaagctctcatttttcactcagaacaaggaggcagagggaggag 320

                                                                       
Query: 121 acgtccatttctgaaacttcaaatctgtgtcaaaaaaaacttacaagatggccatagaat 180
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 acgtccatttttgaaacttcaaatctgtgtcaaaaaaa-cttacaagatggccatagaat 379

                                                                       
Query: 181 ggacaagacagggactgccctgagacagttacaaaaaaa-tgaaagaaagaaaaaaagat 239
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 ggacaagacagggactgccctgagacagttacaaaaaaaatgaaagaaagaaaaaaagat 439

                                                                       
Query: 240 agaaagaaaaccttaattaggatgcaatcctggttattttaagccatacaaaagaatttg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaaagaaaaccttaattaggatgcaatcctggttattttaagccatacaaaagaatttg 499

                                                                       
Query: 300 gcacataatagagtggctgtttcttccagttcatatgataaaactctcaccagtcttaaa 359
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 gcacataatagagtggctgtttcttccagttcatatgataaaattctcaccagtcttaaa 559

                                                                       
Query: 360 atgacagatgtaatattacctttaataagtgtctaccgatgcatgcaaattgaattagat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgacagatgtaatattacctttaataagtgtctaccgatgcatgcaaattgaattagat 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)