BAC Information

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BAC

Clone NameMSMg01-470M18
Chromosome1 (Build37)
Map Location 161,797,437 - 161,797,661
singlet/doubletsinglet
Overlap geneTnr
Upstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470M18.T7 (MSMg01no470_m18.b1)MSMg01-470M18.TJ (MSMg01no470_m18.g1)
ACCAG553715AG553716
length770777
length of high quality
(start - end)
234 (69 - 302)230 (82 - 311)
definitionCHROMAT_FILE: MSMg01no470_m18.b1 PHD_FILE: MSMg01no470_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:49 2005CHROMAT_FILE: MSMg01no470_m18.g1 PHD_FILE: MSMg01no470_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACNCACACTTCCAAAGCACCCGCGGAATCAG
AAGTATCCCTATCGAGCTTTATTTGGCTTGGGTAACCAGACTGGCATTTG
CATGTGTGGATATGAAACATGCCAGTCAAGAAAATGTGCTCATCTGAATT
AAAAGGGCTTCTACTCTAGAGTTGTTTCTGTGAGCCACTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCTTTCCTTCCTTCCTTTCTCTCTTTCTCTTTCTCTTTC
CCTCTTTTTCTTCCTGGCTCTCTCTCTTTCCTTCTTCCTTCCTTCCCATT
CTTCCTTCTTTTCCTCCCTCCTTCTCTCCCCCTCCCCCTCCCCCTCTCCC
TTTTCCTCCCCCTCTCCTTTTCCCTCTCCCTCTCCCTTTCCCTCCCTCTC
TCTCCTTCTTTCCTTCTTTCTCTCCCTCTTCCCTCCCTCTCTTTCCTTCT
CTCCTCCCTTCCTTCTTTCTTTCTTTCTCCCTCTCCCTCCACTCCTTACC
TAAGTCGCCGGATTCTCCCGAACCCGCACACTTACGCCCTCCCCGATCCC
CCCCCAGCTCTCTTGCCCCCTCGAACATCGTCCCTTATAGACTAACCCGC
CTTTCTTTTTGTTTTCGCCCTGCACTACCCCTCTCCTCTTCCCTCCCTCC
TACACACCGTATCCCTCACCCCGCGCCTATTCCCTCACCAATACCATCCC
CCTATATTCCCGCCTCCCCG
TGCATTCGGGAGGCCTGGGGGNCGCCTGGTTGCAAACTATAGGNGACACT
ANAGAAGGATACCAGCACTCCCTGATCNTTCCAGAACTTTTATCATGAAT
GGGTGTTGAATCTTGTCAAACGCTTTTTCTGCATCTAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGGTTATATAATGGATTACATTGATGGATT
TTCGTATATTAAATCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCT
TTATGGATGATTGCTTTAATGTGTTCTTGGATTCGGCTAGCAAGAATTTT
ATTGAGGATTTTTGCTTTTTTATTCATAAGAGAAACTGGCCTGAAGCTCT
CTATCTTTGTTGTTTCTTTCTGTGGCTTAGGTATCAGAGTAACACTGGCT
TCATAAAATGAGCTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAG
TTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAAAACTCT
GCACTAATCCCCGTCTGTTCCTGGGCTTTTTTTGTTTGCTACACTATTAA
TATCTGTTTCCATTTCTTTTATTGCCTTGTTCACTGTTTTATTTCGCCCA
CCTGTTTCCTCACTTTTTTCTTCGTATCTGCGCACCTGACCCGCAATTTG
CCCATCTTTTTTTTTTTTTTTTCAGATTTTGTTCCATCATTACCTTTTTT
ACACCATTCATCTGCTCCGATGACCCCGCAATTTATCCATCCGATTCCTT
CTCCTATTTACTTCATCTTTTCATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_m18.b1 MSMg01no470_m18.b1 CHROMAT_FILE:
MSMg01no470_m18.b1 PHD_FILE: MSMg01no470_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:49 2005
         (234 letters)



>mm_chr1_161797343_161797976
          Length = 634

 Score =  400 bits (207), Expect = e-116
 Identities = 222/229 (96%), Gaps = 4/229 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatttggcttgggtaaccagactggcatttgcatgtgtggatatgaaacatgccagtca 60
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 319 ttatttggcttggataaccagactggcatttgcatgtgtggacatgaaacatgccagtca 260

                                                                       
Query: 61  agaaaatgtgctcatctgaattaaaagggcttctactctagagttgtttctgtgagccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agaaaatgtgctcatctgaattaaaagggcttctactctagagttgtttctgtgagccac 200

                                                                       
Query: 121 ttccttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tttcttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 140

                                                            
Query: 181 ttccttccttccttctttccttccttcctttctctctttctctttctct 229
           |||||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 139 ttccttccttc----tttccttccttcctttctctctttctctttctct 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)