BAC Information

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BAC

Clone NameMSMg01-472B07
Chromosome1 (Build37)
Map Location 52,380,755 - 52,558,031
singlet/doubletdoublet
Overlap geneNab1
Upstream geneLOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
Downstream geneLOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472B07.T7 (MSMg01no472_b07.b1)MSMg01-472B07.TJ (MSMg01no472_b07.g1)
ACCAG554698AG554699
length762744
length of high quality
(start - end)
397 (52 - 448)454 (76 - 529)
definitionCHROMAT_FILE: MSMg01no472_b07.b1 PHD_FILE: MSMg01no472_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:35 2005CHROMAT_FILE: MSMg01no472_b07.g1 PHD_FILE: MSMg01no472_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,557,640 - 52,558,031)(52,380,755 - 52,381,206)
sequence
TCCTAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTCTTCCAAACCCCCTCCCCAAGGAAGGCAAAAATAG
ATTTAATTTTTTTCCCCTTAAAATTTTGGCAATAGCTTTAGCTTTGGAGG
TGCTGTAACACTTTCTTTGGCTAGAAAAGTTTATGCAAACCAAGCTCAAA
ATGTCTACACCTTGCCTTAAGAACTCTATTTTGACACGCTCAAGACAGCA
CCAGGAGTGTGTCATTTGCCTACAGGAAGACAACAGAGAATGGCCTGTAA
AGTAACACAAGGTTTCCAGACATGAAAAGGGTGTCATTAAGCCACCAGGC
CAGAGTTTCCCTTTCCTCCCTCCTCAAACCAGGCCTGGGCGAGGGTGGGG
ACAGGGTGGAGTGGGCGAGGAGGGACAGGTCAGCACCGCACCTGCGGNTC
TGTATCCCCCCACCCCCCTCCCTCCTGGGCGGACCCGGTGCGGAGATTGT
GAGTATCCGTTGTTCGCTGATCCCCGTAAACCTCCTCCTCCTTCCACCTA
GTGTAATCTCTACTACCTCCCGTCGCTACTGTCATATTAATGTCCACACC
TACCCACATGAGTTTTATTTCCATCTCTTACTCCCTCATTCTTCACGAAT
TACTCCGTGCAAAATCCGTGACCAAATGCAATCTATTCCCATACATAATA
ACTCCCTCCACTTCCTTCTTCTTTAGATCTCTCCGCGCTTCTTGTCAACT
TATGCACTTTAG
CCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGATAGGAAAACAGGGAAGCCGC
TTGGTATCTCCTCCATTTCTTCATCTGTAACATAGCATATGTGCTCAGTA
CAGATTTTCTCCTTTGATTGTGGAAAGCACTGTAACTGGGCAGATGTGGA
CTGCTGTCTTGGCCTGCTGTATTCTAGCTGCCTGGCCTGGAGTAAGTCAT
GTCTCTAAACTCATTATTGTTAGGTATAAACAAGGATGACAAAGGATTCA
TTCCTGGAACTTAAGATTAAGATGAGATAACTATCAGAGCAGAGTGCTGG
TACTTTTATAGAAATGTATATATTGCAGTGATAAGATTATTTTACAGATC
CAGACATCAAAACCATTGTCATGGTAATACTCAAGTGCAATCGGCATCCA
AGGATAGAGCCAAGTCACCTAGCCTCTCGGATTTTCACTCAATCTCCATT
CCTGTCATAGACTGACATCTGACTTTTCCAGCCTGAGGTGCTGAGGATGC
AACGTCTCAGCCTGTCTTGCTTGCTGGATCTTAAATTCTGGAGGCATCTT
CTTGTACTTCATGTAATTGCAACCTTCCCTTACCATTACCGCCCAAACAT
ATTAATCTACCTTTACCCTGGAATCGCCCCTACTTGCTATTCTCTTACTC
TACGTGGTTTGTATCCCACCTTCTTTTGCCTCCTTATTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_b07.b1 MSMg01no472_b07.b1 CHROMAT_FILE:
MSMg01no472_b07.b1 PHD_FILE: MSMg01no472_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:35 2005
         (397 letters)



>mm_chr1_52557436_52558232
          Length = 797

 Score =  727 bits (376), Expect = 0.0
 Identities = 388/392 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttcttccaaaccccctccccaaggaaggcaaaaatagatttaatttttttcc 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gaattcttttctttgaaaccccctccccaaggaaggcaaaaatagatttaatttttttcc 537

                                                                       
Query: 65  ccttaaaattttggcaatagctttagctttggaggtgctgtaacactttctttggctaga 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 536 ccttaaaattttggcaatagctttagcttttgaggtgctgtaacactttctttggctaga 477

                                                                       
Query: 125 aaagtttatgcaaaccaagctcaaaatgtctacaccttgccttaagaactctattttgac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaagtttatgcaaaccaagctcaaaatgtctacaccttgccttaagaactctattttgac 417

                                                                       
Query: 185 acgctcaagacagcaccaggagtgtgtcatttgcctacaggaagacaacagagaatggcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 acgctcaagacagcaccaggagtgtgtcatttgcctacaggaagacaacagagaatggcc 357

                                                                       
Query: 245 tgtaaagtaacacaaggtttccagacatgaaaagggtgtcattaagccaccaggccagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgtaaagtaacacaaggtttccagacatgaaaagggtgtcattaagccaccaggccagag 297

                                                                       
Query: 305 tttccctttcctccctcctcaaaccaggcctgggcgagggtggggacagggtggagtggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tttccctttcctccctcctcaaaccaggcctgggcgagggtggggacagggtggagtggg 237

                                           
Query: 365 cgaggagggacaggtcagcaccgcacctgcgg 396
           |||||||||||||||| |||||||||||||||
Sbjct: 236 cgaggagggacaggtccgcaccgcacctgcgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no472_b07.g1 MSMg01no472_b07.g1 CHROMAT_FILE:
MSMg01no472_b07.g1 PHD_FILE: MSMg01no472_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:35 2005
         (454 letters)



>mm_chr1_52380553_52381406
          Length = 854

 Score =  820 bits (424), Expect = 0.0
 Identities = 445/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgataggaaaacagggaagccgcttggtatctcctccatttcttcatctgtaacatagca 62
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgataggaaaacagggaagccacttggtatctcctccatttcttcatctgtaacatagca 262

                                                                       
Query: 63  tatgtgctcagtacagattttctcctttgattgtggaaagcactgtaactgggcagatgt 122
           ||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||
Sbjct: 263 tatgtgctcagtacagattttctgcttttattgtggaaaacactgtaactgggcagatgt 322

                                                                       
Query: 123 ggactgctgtcttggcctgctgtattctagctgcctggcctggagtaagtcatgtctcta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggactgctgtcttggcctgctgtattctagctgcctggcctggagtaagtcatgtctcta 382

                                                                       
Query: 183 aactcattattgttaggtataaacaaggatgacaaaggattcattcctggaacttaagat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 383 aactcattattgttaggtataaacaaggatgacaaaggattcattcctggaacttaagaa 442

                                                                       
Query: 243 taagatgagataactatcagagcagagtgctggtacttttatagaaatgtatatattgca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taagatgagataactatcagagcagagtgctggtacttttatagaaatgtatatattgca 502

                                                                       
Query: 303 gtgataagattattttacagatccagacatcaaaaccattgtcatggtaatactcaagtg 362
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgataacattattttacagatccagacatcaaaaccattgtcatggtaatactcaagtg 562

                                                                       
Query: 363 caatcggcatccaaggatagagccaagtcacctagcctctcggattttcactcaatctcc 422
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 563 caatcggcatccaaggatagagccaagtcacctagcctctcggatttccactcaatctcc 622

                                           
Query: 423 attcctgtcatagactgacatctgacttttcc 454
           ||||||||||||||||||||||||||||||||
Sbjct: 623 attcctgtcatagactgacatctgacttttcc 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)