Query= MSMg01no472_c13.b1 MSMg01no472_c13.b1 CHROMAT_FILE:
MSMg01no472_c13.b1 PHD_FILE: MSMg01no472_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:41 2005
(578 letters)
>mm_chr1_183102022_183102999
Length = 978
Score = 634 bits (328), Expect = 0.0
Identities = 338/342 (98%), Gaps = 2/342 (0%)
Strand = Plus / Minus
Query: 21 ttgagatgttttatagtgtgatttaaaacttaacaaaggggataaagcagacttcaaggc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttgagatgttttatagtgtgatttaaaacttaacaaaggggataaagcagacttcaaggc 281
Query: 81 cattttaatcttcatttaatcttttaaccaagttccagggctactcaaggggaaagggca 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cattttaatcttcatttaatcttttaaccaagttccagggctactcaaggggaaagggca 221
Query: 141 ccaggtggtggtggcagcccacgcctttaatcccagcagaagacagaggcaggtggattt 200
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 220 ccaggtggtggtggcagcccacgcctttaatcccagcagaagac--aggcaggtggattt 163
Query: 201 cttgagttcaaggccagcctgttccacagagtggatcacaggccagcttgggctacacag 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cttgagttcaaggccagcctgttccacagagtggatcacaggccagcttgggctacacag 103
Query: 261 agaaaccctgtcttggagaaacacaagcatagggagtgggatgccccgtaggcctggctg 320
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 102 agaaaccctgtcttggagaaacacaagcacagggagtgggatgccccgtaggcctggttg 43
Query: 321 gctggctggctcagaggtcaggagagagagcactggctgtac 362
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 gctggctggctcagaggtcaggagagagagcactggctgtac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_c13.g1 MSMg01no472_c13.g1 CHROMAT_FILE:
MSMg01no472_c13.g1 PHD_FILE: MSMg01no472_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:42 2005
(244 letters)
>mm_chr1_182909317_182909960
Length = 644
Score = 215 bits (111), Expect = 2e-60
Identities = 123/127 (96%)
Strand = Plus / Plus
Query: 1 tccatggactggagctgtgtcaagagtcccattaccttccacctgattataccttcccac 60
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct: 79 tccatggactggagctgtgtcaagagccccattacctttcacctgattatatcttcccac 138
Query: 61 ttcccacatccaccacttccagcctggggtatgagtcttctttctggacccataactacc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 139 ttcccacatccaccacttccagcctggggtatgagtcttctttctggacccaaaactacc 198
Query: 121 tgtctgt 127
|||||||
Sbjct: 199 tgtctgt 205
Score = 174 bits (90), Expect = 4e-48
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 128 cactgctaggacatccatgcttcccatgccggggcagagactgaaggtgctgcaggcatc 187
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 328 cactgctaggacatccatgcttctcatgccggggcagagactgaaggtgctgcaggcatt 387
Query: 188 ggtgccaggagcgtaccaagtccttgccaggcacccggtggggttc 233
|||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 388 ggtgccaggagcgtgccaagtccttgccaggcacccagtggggttc 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
