BAC Information

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BAC

Clone NameMSMg01-472D14
Chromosome1 (Build37)
Map Location 25,698,316 - 25,698,836
singlet/doubletsinglet
Overlap geneBai3
Upstream geneLmbrd1, 4930472D16Rik, LOC669171, LOC665595
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472D14.T7 (MSMg01no472_d14.b1)MSMg01-472D14.TJ (MSMg01no472_d14.g1)
ACCAG554808AG554809
length746839
length of high quality
(start - end)
526 (47 - 572)44 (73 - 116)
definitionCHROMAT_FILE: MSMg01no472_d14.b1 PHD_FILE: MSMg01no472_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:47 2005CHROMAT_FILE: MSMg01no472_d14.g1 PHD_FILE: MSMg01no472_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTCTTTCTCCCTTTATATTTCCATGTTCTTCTGTCCTACAGG
ATTATAGTTTTTCTTTTCATTTTATTAGACTATTTGAGATTTTAGTGGAA
GATTTTTCTTTGTCCTGGCCTTTGATGTTTTAAGAACAATGTTGGTGTGA
GCTGTTGGAGGTTATTTTTTATTGCTATATGTAAGTACATATTAGATATG
GCCAGGGAATGGATTATCATATGATATCATATTATTATGTCATAAGTGTC
ATTAAATTAAGTTATAATTTATCTCTCAAGAACACTTTCGATATAAACTG
TGTCTTTTTGCCTAGAGAGTTAAAGTGCAGCTATGCATATAGGAAAGTGA
CATTGCACTGTGGTAGGAGACCGTCTATGTTGTTGGCTAGAAGGTCTGAT
GGGCAGAGTGATGCTTTGCGTGGCTTGCTGCTGTGTTTTGTTTTGTGGTT
TACTGTGTCAAAGTACATCTGCAGAGGCTTTTGTTCCTTCATGTTTTAAG
TGAAAAATGTATGATATTGGAAATGTCTTGGACATATCTCACCCAGTCGG
TCTGTCTCATCCATTATTAAGCTCTGGAGACTTTTACTTCCTGTCAGTTT
ATCTCTATAGAAGTTTTGAGAGCTTACACTTGATGGTCTCTCTTTTATGA
TACGACAGTTTCATTTCTCATATTATCACTCCTCTCCGAACATGTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCAGCGATAATCCCAATGATAGCCAAGTTGTTATTGGCAA
TTGCTAGCTTCTGGAAGGAGTGTTTGTTTTTTGAAGGGTGTAGCCCCTGG
TAAGTCAACATGCATTCCAAGAGAAGGCCATACATCCAAGAATAGTCGGG
CACTACACATTCATCTCGATGGAAAAAGAACAAAAGGCCCAAAGTTGTAC
TTATGGGTAAGAGGGTAGGTTTCTGATAATAGGTGTCGGCACGAACGATG
AATACGCGATCTAATTTTTCTTTTTGAGAATCCCACAACAACTTAAAACA
ATATCCCTTTTATAACGCCCCCGCCATCTTGGCTTATACAACCTTTTCCC
CTGTTATTGACTTCACTTATTATTTGATTTTCAGTATTTCCTCCTTTCGC
TGTCTCCCCCCCTGCAATAATTAATTCCTTTCACCCTTGTCCTTTTGCCC
CTTACCACTATCTTCTATTAATATTTTTATAATTTCCGCCCCCGCGCTTT
GTTACCACCATATTGCTTTCATTCACCCCTTTATCTTAGTCGTTTCGTTC
CTTTTTACCAACCACCTATATTCGCCCCGCATTACTCCTCTTCATTACTT
TTTGTACGCTCACTTCCATTATTTTTCTTTGATACCTTCCCTCTCATATT
ATTGCACCTCGAATACATCTTTCTCGTCCTTCTTTTTTTGTCGCGCCATT
ACTCGGTTTTAATTTTTATGGCTTTTTGCCACCCTTTTCTCCCCTCTTAT
CCACCCCCCAGAACTAACTACGCCCATTATTTACGACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_d14.b1 MSMg01no472_d14.b1 CHROMAT_FILE:
MSMg01no472_d14.b1 PHD_FILE: MSMg01no472_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:47 2005
         (526 letters)



>mm_chr1_25698113_25699036
          Length = 924

 Score =  911 bits (471), Expect = 0.0
 Identities = 510/523 (97%), Gaps = 2/523 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttctttctccctttatatttccatgttcttctgtcctacaggattatagtt 63
           |||||||||||| || |  ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 724 ggaattcttttcatt-tagctttatatttccatgtt-ttctgtcctacaggattatagtt 667

                                                                       
Query: 64  tttcttttcattttattagactatttgagattttagtggaagatttttctttgtcctggc 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 666 tttcttttcattttattagactatttgagattttagtggaggatttttctttgtcctggc 607

                                                                       
Query: 124 ctttgatgttttaagaacaatgttggtgtgagctgttggaggttattttttattgctata 183
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 606 ctttgatgttttaagaacaatgtttgtgtgagctgttggaggttattttttattgcaata 547

                                                                       
Query: 184 tgtaagtacatattagatatggccagggaatggattatcatatgatatcatattattatg 243
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 546 tgtaagtacatattagatatggccagggaaaggattatcatatgatatcatattattatg 487

                                                                       
Query: 244 tcataagtgtcattaaattaagttataatttatctctcaagaacactttcgatataaact 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 486 tcataagtgtcattaaattaagttataatttagctctcaagaacactttcgatataaacc 427

                                                                       
Query: 304 gtgtctttttgcctagagagttaaagtgcagctatgcatataggaaagtgacattgcact 363
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 426 gtgtctttttgcctagagagttaaagtgcacctatgcatataggaaagtgacattgcact 367

                                                                       
Query: 364 gtggtaggagaccgtctatgttgttggctagaaggtctgatgggcagagtgatgctttgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtggtaggagaccgtctatgttgttggctagaaggtctgatgggcagagtgatgctttgc 307

                                                                       
Query: 424 gtggcttgctgctgtgttttgttttgtggtttactgtgtcaaagtacatctgcagaggct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtggcttgctgctgtgttttgttttgtggtttactgtgtcaaagtacatctgcagaggct 247

                                                      
Query: 484 tttgttccttcatgttttaagtgaaaaatgtatgatattggaa 526
           ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 tttgttccttcatgttttaagtgaaaaatttatgatattggaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 924
Length adjustment: 10
Effective length of query: 516
Effective length of database: 914
Effective search space:   471624
Effective search space used:   471624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)