Query= MSMg01no472_d15.b1 MSMg01no472_d15.b1 CHROMAT_FILE:
MSMg01no472_d15.b1 PHD_FILE: MSMg01no472_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:47 2005
(492 letters)
>mm_chr1_10488810_10489700
Length = 891
Score = 890 bits (460), Expect = 0.0
Identities = 484/492 (98%), Gaps = 1/492 (0%)
Strand = Plus / Plus
Query: 1 tagaatatatgtgtagtttaaaaagttaggtttattggtttgttgcaaccaggacatttc 60
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tagaatatatgtgtagttaaaaaagttaggtttatt-ttttgttgcaaccaggacatttc 259
Query: 61 aatatgaggaatgttagatcattgacctgccatggggccattttgtgtaggggttaagga 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aacatgaggaatgttagatcattgacctgccatggggccattttgtgtaggggttaagga 319
Query: 121 acgtggagctttttctgcactgaatacttctgagcaaggggatcgatcttgttatctaat 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acgtggagctttttctgcactcaatacttctgagcaaggggatcgatcttgttatctaat 379
Query: 181 gtcataattctatctagcaggtgtgaggaataaagtggagagagcttgactaggcagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtcataattctatctagcaggtgtgaggaataaagtggagagagcttgactaggcagaga 439
Query: 241 actggtattcttatcaattagctaagggtgtctttgtcatttttctgtaatagataatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actggtattcttatcaattagctaagggtgtctttgtcatttttctgtaatagataatta 499
Query: 301 tttttaatttggtccatgtttagttatcgaaatatattcttattagtcttatttcttggt 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 500 tttttaatttggtccatgtttagttatcgaaatatgttcttattagtcttatttcttggt 559
Query: 361 atgaacactgcagccttttctaaaggtttgtgttcactagaatataccacattccagctg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgaacactgcagccttttctaaaggtttgtgttcactagaatataccacattccagctg 619
Query: 421 aggtggtcaggctggctttcccctttctaaagataaccactgatccacttaggacaagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 620 aggtggtcaggctggctttcccctttctaaagataaccactgatccacttaggccaagtg 679
Query: 481 atagctaatgga 492
||||||||||||
Sbjct: 680 atagctaatgga 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_d15.g1 MSMg01no472_d15.g1 CHROMAT_FILE:
MSMg01no472_d15.g1 PHD_FILE: MSMg01no472_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:47 2005
(135 letters)
>mm_chr1_10626309_10626847
Length = 539
Score = 236 bits (122), Expect = 4e-67
Identities = 131/136 (96%), Gaps = 4/136 (2%)
Strand = Plus / Minus
Query: 1 agctacatgataaatggtgggaagacaatgggatgggcaggaaaagagataa----gtgt 56
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 336 agctacatgataaatggtgggaagacaatgggatgggcaggaaaagagataaagccgtgt 277
Query: 57 taggcaggctcagatcgccagcatagctctgagagtgtcaagcaggaagcagctaggttg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 taggcaggctcagatcgccagcatagctctgagagtgtcaagcaggaagcagctaggttg 217
Query: 117 ggggaggaagggatgg 132
|||||||||||||||
Sbjct: 216 tgggaggaagggatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 539
Length adjustment: 8
Effective length of query: 127
Effective length of database: 531
Effective search space: 67437
Effective search space used: 67437
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
