TTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTTCATTTTTCTGATAACAAATACAAGGGAGTAAAATTATTCA
AATTTGAGCATTTCTTTCCACAGTTTTGGGAATGTAAATTTATATTCCTC
TTAAAGAAGCTAATGATGTTGCAGGCAGGGAAAATATCCTACGTGTCTTA
ACAAAAACAGACAGGAATTGTGCTGAGAAATATGATGTTGTATCATAAAT
TCAGTTTATTTTTGTCAAAATAGAAGAAAATCTAGCCAATCTTTTAAATA
TCAAAGGATTATGGCCAATTCTATCTTCTTCTATGCTCAATTTGTTTAAT
CTCTGTAAATAAATTTTAACTAATTCTATTTTTCTGTCAGTTCCACAGCC
AACAAGTTTTTAAGATTCATTGTCTACCATATGTTACTACAAAAAAGTTT
TCCAGAAGGAGATTTGAATTTTGAGATCAGAGTCTTATCTATCCATATGT
GAAAAACATCTGCTCTTCCTTAAGGACAGCCAATGTCTATGTTAAGTATC
TATTCAGGTCCTCCAGATTCCCTAGAGCATTAATAAAAGAAATATTTCAT
ATAATATCCATAAATATGGTCAAAAATAGTTTGGTTAAGAAATAGGATAT
CCTTATCAAATGGGAAAACCCTGTAAGCAAATGGCTTTTATGGACAGGCC
TCTTTTAATTTAACCAAAAAGTTTTTATGAATATTCCTTTTTGCACACAT
GTAACCCCTCTTTN

NNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACCTGCCATGATGGTGAGAAATA
AAAATCAAATGTTTACAAAATAGTCAGTCTTAGGTAGTCTTTATAAAAAT
CAAATGTTTACAGAATAGTCAGTCTTAGGTAGTCTTTATTATTTTTCTCA
TTGTCCTGACAAAGCATCTTTCAAAGAGCATTTTCAGGTAAAAAGGAATT
ATCTTAGCTTATTGTGCAAGGCAATGGGGTTCAACAAGATGAGGACACTG
ACAGAGGAACAGAGACAGCTCTCTATATTGTATCTATAGTAAGAAAGCTG
AGAGTGAACAGGAAGTGGCACCAAGCTAAGAGAACCCCAAGCCTTTTTTT
TTTTTTTTTTTGTAACATGCTCCACGTCTTAAGTATTCCACAGTCATTGT
CACCATCTGGATNACATTGTGGAAACTCATGAGTTTATGTCAAAAATCCC
CAACCACAGGCCCCACATTTACTCTTACAGGAGCACAAAGGAAAACTCCC
TTACTTTAATGTCCCGGTTTGCTAAAGAAAAATAATTAATTTTCCAGAAA
AAATTGGTAAATTCACAAAAAGTTCCCTGGGGGGTTTGAAAAAAAAGGGG
GAAGGGTGAACTCACCTTAATTGGTATTTGGGGACCCCTGAGGGTGAATG
GNAATCTTGAGGGTGAACCCCCCTTGGCTAATGTGTGGTTGTTTTACTGG
GGTCATTATATTTGTTCTGTCAG

Query= MSMg01no472_j22.b1 MSMg01no472_j22.b1 CHROMAT_FILE:
MSMg01no472_j22.b1 PHD_FILE: MSMg01no472_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:19 2005
         (480 letters)



>mm_chr1_149695831_149696710
          Length = 880

 Score =  861 bits (445), Expect = 0.0
 Identities = 466/473 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcttcatttttctgataacaaatacaagggagtaaaattattcaaatttgagcatt 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcttcatttttatgataacaaatacaagggagtaaaattattcaaatttgagcatt 267

                                                                       
Query: 68  tctttccacagttttgggaatgtaaatttatattcctcttaaagaagctaatgatgttgc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tctttccacagttttgggaatgtaaatttatattcctcttaaagaagctaatgatgttgc 327

                                                                       
Query: 128 aggcagggaaaatatcctacgtgtcttaacaaaaacagacaggaattgtgctgagaaata 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aggcagggaaaatatcctacgtgtcttaacaaaaacagacaggaattgtgctgagaaata 387

                                                                       
Query: 188 tgatgttgtatcataaattcagtttatttttgtcaaaatagaagaaaatctagccaatct 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgatgttgtatcataaattcagtttatttttgtcaaaatagaagaaaatctagccaatct 447

                                                                       
Query: 248 tttaaatatcaaaggattatggccaattctatcttcttctatgctcaatttgtttaatct 307
           ||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||
Sbjct: 448 tttaaatatcaaaggattatggccatttctatcagcttctatgctcaatttgtttaatct 507

                                                                       
Query: 308 ctgtaaataaattttaactaattctatttttctgtcagttccacagccaacaagttttta 367
           |||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 508 ctgtaaataaatcttaactaatcctatttttctgtcaggtccacagccaacaagttttta 567

                                                                       
Query: 368 agattcattgtctaccatatgttactacaaaaaagttttccagaaggagatttgaatttt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agattcattgtctaccatatgttactacaaaaaagttttccagaaggagatttgaatttt 627

                                                                
Query: 428 gagatcagagtcttatctatccatatgtgaaaaacatctgctcttccttaagg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gagatcagagtcttatctatccatatgtgaaaaacatctgctcttccttaagg 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)