BAC Information

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BAC

Clone NameMSMg01-472M03
Chromosome1 (Build37)
Map Location 41,848,041 - 41,848,514
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472M03.T7 (MSMg01no472_m03.b1)MSMg01-472M03.TJ (MSMg01no472_m03.g1)
ACCAG555216AG555217
length771767
length of high quality
(start - end)
466 (68 - 533)481 (74 - 554)
definitionCHROMAT_FILE: MSMg01no472_m03.b1 PHD_FILE: MSMg01no472_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:30 2005CHROMAT_FILE: MSMg01no472_m03.g1 PHD_FILE: MSMg01no472_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAGATTAACAGATAATTGTAATATGCTATTAAAGTATGAAAAAT
TGAAATACTGTAAGATTTTTGTCAGTAGGGTATCATGGATGGGCCTGAGT
ACATTATGTTAAGGAAAAATCCTGGCCACAGAAAAACAGACATTCAAAAG
GATAATTTTAAAATGTTAATGTCAATAGAAGTAGAGTTAAGTATAAAGAG
TTAACAAAATAGGAGCACAGACCACTCAATGTGTATGTTGTGCCCTGCAG
TAAGAGAAATACTACATTCTTAAGTAATGAGAAGAATATAATCAATAAAG
TTGAATTAATTGTTTCAAAAGTTAAAAGGAATTTGTGTACAGTCACCATA
AATGATAAAAACAGGATGGGGTAGGGTGTGCTTAATCCCAATTATTGGGA
AACTGAGGCTGGAAAAAAAATCCCACTTCCAAGCCAGTCGAAACAACTTC
ATGAGAACCTTAGCGAAATAATAATTGAACACAGTAATAAAAACCTAAGG
CATGGCTCAGCTGAGGGAAACTTGCATAGTCACATAGTCTACCGGGGAAT
TAAAGCAACACATTCTTTTGGACACACCCTTTCTAAGAAATGACCNGGAG
TGATGATTTCTCTGAAGGGGCCCCCCCCTATGCTTCCTTTGGATCTTCTC
ACACAAATTTTTTTGGCTCCCTATCTTTTGACTTCCCCCCCCCTTTTGCA
ACAAATTAACTTTTCGTTTGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTAAAAATGTTGCTATTCACTGACAT
TCAGAATAGCCTCTGGTACTACACTATTACTTTGAGTAAAAGCTAGATCA
CTGCCCTTCACAGGAATCTACCATCACCAAGGAAGAAGGAAGTTTCTGAC
CGAAGGAGAAACCAGAATAGATACTTAGAACTATAGCTGAGTTACACCCA
TATACAGGAATTTACAATGGTTTAGGAAGTAGATCGGGCTGTGGTTTTAG
AGTATTGCATTATTCATGTTTATGGTTAGCTAGAATGGAACTCCCTAGTT
AGAACCATGACTTGGGTCTGAAAGCCCTTGCCCTAGGAGTGAAAAGATCT
CACACCTGGCTTCCAAGACTATAGCTGACCTTAGATAGGGCTGACGTTGT
CTCAGTTATTTTTATTGCCCAGTTCCTTCCGATCTTTGCGTTTTCATTCC
TCTGTTCTGTGTAAAAGTCATTAAGCATCGGGTTACCTCATTTGTACCTT
GCGGGCATGTCACCCAACTCCATTATTGTCTTCTGTATAAAAAGCCTGAT
GCTCGATTTGACAATTACATTCAGATTCTAAACAACCTTCTCCTGTGTGC
TTCTGTTTGTCTATTCCCCTGAAAGCTCGGCCCCTCCCGATTATAAAACC
TTTTCTCTGTTCATAATGGCCCCTCTAAGCTGTGCCCCCCCTGTCCGCCC
CGGTTCTCGTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_m03.b1 MSMg01no472_m03.b1 CHROMAT_FILE:
MSMg01no472_m03.b1 PHD_FILE: MSMg01no472_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:30 2005
         (466 letters)



>mm_chr1_41847850_41848714
          Length = 865

 Score =  801 bits (414), Expect = 0.0
 Identities = 457/476 (96%), Gaps = 12/476 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataattgtaatatgctattaaagtatgaaaaattgaaatactgtaagatttttgtcagta 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 192 ataattgtaatatgctattaaagtatgaaaaattgaaatagtgtaagatttttgtcagta 251

                                                                       
Query: 61  gggtatcatggatgggcctga-gtacattatgttaaggaaaaatc-ctggccacagaaaa 118
           ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct: 252 gggtatcatggatgggcctgaagtacattatgttaaggaaaaa-cactggccacagaaaa 310

                                                                       
Query: 119 acagacat--------tcaaaaggataattttaaaatgttaatgtcaatagaagtagagt 170
           ||||||||        ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acagacatgattctattcaaaaggataattttaaaatgttaatgtcaatagaagtagagt 370

                                                                       
Query: 171 taagtataaagagttaacaaaataggagcacagaccactcaatgtgtatgttgtgccctg 230
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 371 taagtataaagagttaacaaagtaggagcacagaccactcaatgtgtatgttttgccctg 430

                                                                       
Query: 231 cagtaagagaaatactacattcttaagtaatgagaagaatataatcaataaagttgaatt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cagtaagagaaatactacattcttaagtaatgagaagaatataatcaataaagttgaatt 490

                                                                       
Query: 291 aattgtttcaaaagttaaaaggaatttgtgtacagtcaccataaatgataaaaacaggat 350
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aattgtctcaaaagttaaaaggaatttgtgtacagtcaccataaatgataaaaacaggat 550

                                                                       
Query: 351 ggggtagggtgtgcttaatcccaattattgggaaactgaggctggaaaaaaaatcccact 410
           |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 551 ggggtagaatgtgcttaatcccaattattgggaaactgaggctggaaaaaaa-tcccact 609

                                                                   
Query: 411 tccaagccagtcgaaacaacttcatgagaaccttagcgaaataataattgaacaca 466
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 610 tccaagccagtcgaaacaacttcatgagaaccttagtgaaataataattgaacaca 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 865
Length adjustment: 10
Effective length of query: 456
Effective length of database: 855
Effective search space:   389880
Effective search space used:   389880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)