BAC Information

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BAC

Clone NameMSMg01-473A15
Chromosome1 (Build37)
Map Location 186,397,625 - 186,397,959
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666649, 1700056E22Rik, Dusp10
Downstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473A15.T7 (MSMg01no473_a15.b1)MSMg01-473A15.TJ (MSMg01no473_a15.g1)
ACCAG555432AG555433
length1,523801
length of high quality
(start - end)
---335 (76 - 410)
definitionCHROMAT_FILE: MSMg01no473_a15.b1 PHD_FILE: MSMg01no473_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:54 2005CHROMAT_FILE: MSMg01no473_a15.g1 PHD_FILE: MSMg01no473_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTGTGCTGTTTTAGTGCGCGTGTGTGAGGTGTAGTCTGATGTGATCTTC
TTGGTGAGTGGTGCGATAGTAAGTGGCTATGTGTGTGTTATCTACTCCGT
CGCAGGTACTGACGTGGACGACACGAGGAGCAGTCGGGCAGTGTGGTGGC
GTGGCGAGCGGTAGGCCACCGGTGTGCTGTGTGATGTGTGTTTAGTCGTA
CGCTCACTGTGTGTGTGTTCATCGCTATGCCTTAGCGTACGTGTCTCGCT
TGTGTGTCGCTGCGATCAGCGCGCCGCGGTCGCGCCGCTGTTGGCCGTCT
CCTGCTATGNACTACGCTCTTCGCTACGATCGCTTGCTCGTGTGTTCCGT
TCGGCATTCATCGTCATAGCCTATATCGTCACAGCATAACACGTGCGCGT
CTCTTGCTATCAGTACTCGTTCGTCGGAGCTGAGCTGCTGTCGCGACTGG
CACGCTGGCACTCTATCACTGCGTCTAGCTNTNCGCCATCGGCGCATGAG
TATCGAGTCGTGATNTGTCGGCGTGGTGTGCGCGCGCGTCGACGTTCGTG
CATGGATACTTGTCGACGCGACTATCGTGATTGCCGTGCTGTACGCACGC
GTCACTCTGCGCACGACGGCAGTGATAGTCCAGATTGCAGCATGATCGGT
GCGATGTGACTAGATGAGATGTGATGTGTCTCGTTGGTATGTGATGTTCT
GCGACTGATGTTGATGAGCGAGTGTGAAGATGCATGCGCGCGACGCGACT
GTATGATACGCTCGCTCGATAGTGCGTCACANCTNTACTCTCGATATCCT
ATCGCATGATAAGTGCGGCACGCCGCGTGTGCGCCTCGCTGTGGCGCAGT
CGAGCGTGCGAATACCCGCGTCCTGCTCTCGTATTCATCGTCTCCTCGCG
TANCCCGTGTAGCGACTCTCTTGCTGAGGACGCGTACTCTCGTGCTATAC
TATNCNTTATACACTCGTGGTCTGCTGTCTGTGGCGCGCCGGTGGTTCGT
CGACGCGTTTGTGTCGCGGTCCAGGCGACATAGCGTCACATAAGGTGTAT
GCGACACAGACTGGCGTGGTCGCAGCTTCGTTCTGATTCANACCCACGAC
GATATGCTGTGTCTGCGTCGCGACGGAGCGGTAGCGCGATCGCTGTGATA
TCATATATGCGCGTGCGTATTGGTGCGCTTCGTTATAGTACCCGTGTCCG
GACGCCTCTCACGTGTGAGTGCCCTGACAGCTGTCGTGCATGCCCGCATC
TATNGACATCAGCGCGATCGCTGCCGCTGGAACGTTTGACCGCGTNGACC
GTCAGGCACGGAGAGCGCACAGTGTNCTCGTGTACNGCACTCGCATGACT
CTACGACNTACGCGGACGCGCGCGTGTCGACTCGTATNTGTAATGATCCA
CACGCGCTCGACTATCGCTCGCTCNAGACTCGGATGTCTTAGACCTTGCT
GTTCCGTGGATCTATACGCGAACATCACATTTGCGTGACTGACGCTGTGC
GCGTTGTGCGTCGAGGCGCGTCN
ACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTCTGGGCTACTTGAGCGACATG
GGTAGTGTGGCCACGTGTTCTGGGCCAGGAATCTGGCAGGGATCAGGGAG
ACATCTACCCTCTCAGGTGGGTGCCTGGGTGCCAGGGTCTCAGACCCACT
CGATTCAAGTTTCTTGGCATGGTTCTTTGTTGTACATCTTGTTAATCTCA
GATGGTGAGTGTTGCAGCTCTTATGAGATGAAGGCTGTGGTTTTCTTGCT
CACTTCTCTCGTCCATGAACAAAGATATTTTTGAGAGGTAACTATTTTCA
GCTGAAAGCAAACAGCCTTTTAAAAAGTGTCTCTGTTTCCTTAGGTGCAG
ACATTTTGGAAATGCCAAATCGAAAATGCATATGCTCCCGTGGAAGAAGC
AAAGGGGGTTGATTTGCTAAGTGTGCATCTCTTTGTTGTGGCTCAAAAAT
CTGAGCGTGATTTCTTGGGAAACCGTCCTAGTGTAATTGAAAGAATTCTG
TGGTTCTAATTTGTGAGCCCCCACTGGGGCTGTCTATTTCTATTTATATT
TTTGTCCTTTTTATGGGTTACTCCGTTAACCTATTTCTTTGTTTTGCCAT
CTGCGTTACTTCTGGTTGATTATTCGTCCTTTCCGTTTCTCTACATTCGC
ATACTCTTTCTATAAACATAAGTTCTTTATAGCTGTTATTCTCCCCTTTA
TGACTTGTCTTTTTTATTTATGCTGTCTAGTTTAGATTTATACGCTCATC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_a15.g1 MSMg01no473_a15.g1 CHROMAT_FILE:
MSMg01no473_a15.g1 PHD_FILE: MSMg01no473_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:54 2005
         (335 letters)



>mm_chr1_186397264_186397998
          Length = 735

 Score =  598 bits (309), Expect = e-175
 Identities = 330/337 (97%), Gaps = 4/337 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttctgggctacttgagcgacatgggtagtgtggccacgtgttctgggccaggaatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgttctgggctacttgagcgacatgggtagtgtggccacgtgttctgggccaggaatctg 637

                                                                       
Query: 61  gcagggatcagggagaca-tctaccctctcaggtgggtgcctgggtgccagggtctcaga 119
           |||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct: 636 gcagggatcagggagacact-taccctctcaggtgggtgcctgcgtgccagggtctcaga 578

                                                                       
Query: 120 cccactcgattcaagtttcttggcatggttctttgttgtacatcttgttaatctcagatg 179
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cccactcaattcaagtttcttggcatggttctttgttgtacatcttgttaatctcagatg 518

                                                                       
Query: 180 gtgagtgttgcagctcttatgagatgaaggctgtggttttcttgctcacttctc-tcgtc 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 517 gtgagtgttgcagctcttatgagatgaaggctgtggttttcttgctcacttctcgt-gtc 459

                                                                       
Query: 239 catgaacaaagatatttttgagaggtaactattttcagctgaaagcaaacagccttttaa 298
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 catgaacaaagatatttttaagaggtaactattttcagctgaaagcaaacagccttttaa 399

                                                
Query: 299 aaagtgtctctgtttccttaggtgcagacattttgga 335
           |||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaagtgtctctgtttccttaggtgcagacattttgga 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)