MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-473B01
Chromosome	1 (Build37)
Map Location	122,344,130 - 122,344,689
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2
Downstream gene	Marco, En1, AI848258, Insig2, Ccdc93
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ralb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64143 MGI:1927244
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem185b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226351 MGI:1917634
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Epb4.1l5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226352 MGI:103006
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptpn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19258 MGI:1099792
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042447 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 125 ESTs, 2 Proteins pseudo : _no_value

name	LOC666870 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666870
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100041863 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041863
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Tmem177 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66343 MGI:1913593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm101 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226356 MGI:2684947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 1 Protein pseudo : _no_value

name	Sctr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319229 MGI:2441720
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem37 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170706 MGI:2157899
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dbi (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13167 MGI:94865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	3110009E18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73103 MGI:1920353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Steap3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68428 MGI:1915678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C1ql2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226359 MGI:3032521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Marco (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17167 MGI:1309998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	En1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13798 MGI:95389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI848258 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98452 MGI:2138347
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Insig2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72999 MGI:1920249
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ccdc93 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70829 MGI:1918079
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Ralb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352448 GeneID:64143 MGI:1927244
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : v-ral simian leukemia viral oncogene homolog B (ras related) transcript_id : NM_022327.4

name	Tmem185b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122616 GeneID:226351 MGI:1917634
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 185B transcript_id : NM_146103.1

name	Epb4.1l5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368941 GeneID:226352 MGI:103006
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : erythrocyte protein band 4.1-like 5 transcript_id : NM_145506.3

name	Ptpn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117320547 GeneID:19258 MGI:1099792
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, non-receptor type 4 transcript_id : NM_019933.2

name	Tmem177 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62990170 GeneID:66343 MGI:1913593
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 177 transcript_id : NM_175106.3

name	Sctr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60685208 GeneID:319229 MGI:2441720
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : secretin receptor transcript_id : NM_001012322.1

name	Tmem37 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980888 GeneID:170706 MGI:2157899
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 37 transcript_id : NM_019432.2

name	Dbi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83921597 GeneID:13167 MGI:94865
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : diazepam binding inhibitor transcript_id : NM_007830.3

name	Dbi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83921594 GeneID:13167 MGI:94865
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : diazepam binding inhibitor transcript_id : NM_001037999.1

name	3110009E18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930446 GeneID:73103 MGI:1920353
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110009E18 gene transcript_id : NM_028439.1

name	Steap3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803084 GeneID:68428 MGI:1915678
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : STEAP family member 3 transcript_id : NM_133186.2

name	C1ql2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402220 GeneID:226359 MGI:3032521
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 1, q subcomponent-like 2 transcript_id : NM_207233.1

name	Marco (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130131 GeneID:17167 MGI:1309998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : macrophage receptor with collagenous structure transcript_id : NM_010766.2

name	En1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7106304 GeneID:13798 MGI:95389
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : engrailed 1 transcript_id : NM_010133.1

name	AI848258 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363928 GeneID:98452 MGI:2138347
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : expressed sequence AI848258 transcript_id : XM_895892.2

name	Insig2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19526953 GeneID:72999 MGI:1920249
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulin induced gene 2 transcript_id : NM_133748.1

name	Insig2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342571 GeneID:72999 MGI:1920249
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulin induced gene 2 transcript_id : NM_178082.2

name	Ccdc93 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68448541 GeneID:70829 MGI:1918079
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 93 transcript_id : NM_001025156.1

name	Ccdc93 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352460 GeneID:70829 MGI:1918079
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 93 transcript_id : NM_027567.2

name	Ccdc93 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371535 GeneID:70829 MGI:1918079
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 93 transcript_id : NM_029955.2

name	Ralb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11612509 CCDS:CCDS15225.1 GeneID:64143 MGI:1927244
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : v-ral simian leukemia viral oncogene homolog B (ras related) protein_id : NP_071722.1

name	Tmem185b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122617 GeneID:226351 MGI:1917634
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : ee3_2 protein_id : NP_666215.1

name	Epb4.1l5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30841014 CCDS:CCDS15226.1 GeneID:226352 MGI:103006
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008092 - cytoskeletal protein binding [Evidence IEA] GO_process : GO:0048318 - axial mesoderm development [Evidence IMP]; GO:0048339 - paraxial mesoderm development [Evidence IMP] codon_start : 1 product : erythrocyte protein band 4.1-like 5 protein_id : NP_663481.2

name	Ptpn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117320548 CCDS:CCDS15227.1 GeneID:19258 MGI:1099792
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008092 - cytoskeletal protein binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004726 - non-membrane spanning protein tyrosine phosphatase activity [Evidence IDA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : testis-enriched protein tyrosine phosphatase product : protein tyrosine phosphatase, non-receptor type 4 protein_id : NP_064317.2

name	Tmem177 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424705 CCDS:CCDS15228.1 GeneID:66343 MGI:1913593
definition	codon_start : 1 product : hypothetical protein LOC66343 protein_id : NP_780315.1

name	Sctr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60685209 GeneID:319229 MGI:2441720
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : secretin receptor protein_id : NP_001012322.1

name	Tmem37 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506457 CCDS:CCDS15229.1 GeneID:170706 MGI:2157899
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : voltage-dependent calcium channel gamma subunit-like protein product : protein distantly related to to the gamma subunit family protein_id : NP_062305.1

name	Dbi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681137 CCDS:CCDS15230.1 GeneID:13167 MGI:94865
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0000062 - acyl-CoA binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; acyl-CoA binding protein; diazepam-binding inhibitor; diazepam binding inhibitor, splice form 1b product : diazepam binding inhibitor isoform 2 protein_id : NP_031856.1

name	Dbi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83921595 CCDS:CCDS15231.1 GeneID:13167 MGI:94865
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0000062 - acyl-CoA binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; acyl-CoA binding protein; diazepam-binding inhibitor; diazepam binding inhibitor, splice form 1b product : diazepam binding inhibitor isoform 1 protein_id : NP_001033088.1

name	3110009E18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930447 CCDS:CCDS15232.1 GeneID:73103 MGI:1920353
definition	codon_start : 1 product : hypothetical protein LOC73103 protein_id : NP_082715.1

name	Steap3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875326 GeneID:68428 MGI:1915678
definition	GO_component : GO:0005768 - endosome [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005771 - multivesicular body [Evidence ISS]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0050660 - FAD binding [Evidence IEA]; GO:0000293 - ferric-chelate reductase activity [Evidence IMP] [Evidence IDA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006826 - iron ion transport [Evidence IMP]; GO:0009306 - protein secretion [Evidence ISS] codon_start : 1 exception : unclassified translation discrepancy note : dudlin 2 product : dudulin 2 protein_id : NP_573449.1

name	C1ql2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402221 CCDS:CCDS15233.1 GeneID:226359 MGI:3032521
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : complement component 1, q subcomponent-like 2 protein_id : NP_997116.1

name	Marco (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754640 CCDS:CCDS15234.1 GeneID:17167 MGI:1309998
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence IEA] GO_process : GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : macrophage receptor with collagenous structure protein_id : NP_034896.1

name	En1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106305 CCDS:CCDS15235.1 GeneID:13798 MGI:95389
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI]; GO:0030902 - hindbrain development [Evidence IGI]; GO:0030901 - midbrain development [Evidence IGI]; GO:0030917 - midbrain-hindbrain boundary development [Evidence IMP]; GO:0048666 - neuron development [Evidence IGI]; GO:0030182 - neuron differentiation [Evidence IGI]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] citation : [PUBMED 1363401] codon_start : 1 exception : mismatches in translation function : transcription factor note : engrailed-1 product : engrailed 1 protein_id : NP_034263.1

name	AI848258 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363929 GeneID:98452 MGI:2138347
definition	codon_start : 1 product : hypothetical protein LOC98452 protein_id : XP_900985.2

name	Insig2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526954 CCDS:CCDS15236.1 GeneID:72999 MGI:1920249
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006991 - response to sterol depletion [Evidence IDA] codon_start : 1 product : INSIG-2 membrane protein protein_id : NP_598509.1

name	Insig2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017389 CCDS:CCDS15236.1 GeneID:72999 MGI:1920249
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006991 - response to sterol depletion [Evidence IDA] codon_start : 1 product : INSIG-2 membrane protein protein_id : NP_835183.1

name	Ccdc93 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68448542 CCDS:CCDS15237.1 GeneID:70829 MGI:1918079
definition	codon_start : 1 note : isoform a is encoded by transcript variant 1 product : coiled-coil domain containing 93 isoform a protein_id : NP_001020327.1

name	Ccdc93 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21539631 GeneID:70829 MGI:1918079
definition	codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2 product : coiled-coil domain containing 93 isoform b protein_id : NP_081843.1

name	Ccdc93 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21539651 CCDS:CCDS15238.1 GeneID:70829 MGI:1918079
definition	codon_start : 1 exception : mismatches in translation note : isoform c is encoded by transcript variant 3 product : coiled-coil domain containing 93 isoform c protein_id : NP_084231.1

name	LOC666870 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666870
definition	number : 1 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 1 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 2 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 3 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 4 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 5 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 6 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 7 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:234196
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128618
definition	standard_name : D1Mit27

name	(CDS detail)
type	STS
link
xref	UniSTS:234194
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:162200
definition	standard_name : RH125378

name	(CDS detail)
type	STS
link
xref	UniSTS:125073
definition	standard_name : MHAa21a5.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:210536
definition	standard_name : RH136554

name	(CDS detail)
type	STS
link
xref	UniSTS:211217
definition	standard_name : RH127907

name	(CDS detail)
type	STS
link
xref	UniSTS:207200
definition	standard_name : RH126768

name	(CDS detail)
type	STS
link
xref	UniSTS:128725
definition	standard_name : D1Mit366

name	(CDS detail)
type	STS
link
xref	UniSTS:207199
definition	standard_name : BE199656

name	(CDS detail)
type	STS
link
xref	UniSTS:209859
definition	standard_name : RH135861

name	(CDS detail)
type	STS
link
xref	UniSTS:232945
definition	standard_name : RH143699

name	(CDS detail)
type	STS
link
xref	UniSTS:234197
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128607
definition	standard_name : D1Mit260

name	(CDS detail)
type	STS
link
xref	UniSTS:123162
definition	standard_name : 13.MMHAP25FRE7.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:234198
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128908
definition	standard_name : D1Mit54

name	(CDS detail)
type	STS
link
xref	UniSTS:178453
definition	standard_name : AI173373

name	(CDS detail)
type	STS
link
xref	UniSTS:234199
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128529
definition	standard_name : D1Mit191

name	(CDS detail)
type	STS
link
xref	UniSTS:234200
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128750
definition	standard_name : D1Mit389

name	(CDS detail)
type	STS
link
xref	UniSTS:124530
definition	standard_name : 44.MMHAP24FRG11.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:158845
definition	standard_name : U18424

name	(CDS detail)
type	STS
link
xref	UniSTS:178454
definition	standard_name : AI323439

name	(CDS detail)
type	STS
link
xref	UniSTS:128752
definition	standard_name : D1Mit391

name	(CDS detail)
type	STS
link
xref	UniSTS:128568
definition	standard_name : D1Mit226

name	(CDS detail)
type	STS
link
xref	UniSTS:128630
definition	standard_name : D1Mit28

name	(CDS detail)
type	STS
link
xref	UniSTS:116257
definition	standard_name : D1Mit217

name	(CDS detail)
type	STS
link
xref	UniSTS:272950
definition	standard_name : PMC314463P1

name	(CDS detail)
type	STS
link
xref	UniSTS:98355
definition	standard_name : RH104030

name	(CDS detail)
type	STS
link
xref	UniSTS:142987
definition	standard_name : En1

name	(CDS detail)
type	STS
link
xref	UniSTS:128783
definition	standard_name : D1Mit419

name	(CDS detail)
type	STS
link
xref	UniSTS:128785
definition	standard_name : D1Mit420

name	(CDS detail)
type	STS
link
xref	UniSTS:142247
definition	standard_name : D1Mit470

name	(CDS detail)
type	STS
link
xref	UniSTS:178456
definition	standard_name : AI848258

name	(CDS detail)
type	STS
link
xref	UniSTS:128751
definition	standard_name : D1Mit390

name	(CDS detail)
type	STS
link
xref	UniSTS:272505
definition	standard_name : PMC303355P2

name	(CDS detail)
type	STS
link
xref	UniSTS:113660
definition	standard_name : AU027072

name	(CDS detail)
type	STS
link
xref	UniSTS:167280
definition	standard_name : AU022885

name	LOC100042447 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149234271 GeneID:100042447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 125 ESTs, 2 Proteins product : similar to 2810416G20Rik protein pseudo : _no_value transcript_id : XR_033831.1

name	Gm101 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149234237 GeneID:226356 MGI:2684947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 1 Protein product : gene model 101, (NCBI) pseudo : _no_value transcript_id : XR_033084.1

clone name	MSMg01-279F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132A13
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-473B01.T7 (MSMg01no473_b01.b1)	MSMg01-473B01.TJ (MSMg01no473_b01.g1)
ACC	AG555452	AG555453
length	752	773
length of high quality (start - end)	567 (72 - 638)	368 (79 - 446)
definition	CHROMAT_FILE: MSMg01no473_b01.b1 PHD_FILE: MSMg01no473_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:56 2005	CHROMAT_FILE: MSMg01no473_b01.g1 PHD_FILE: MSMg01no473_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:56 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCCATCTGGAGTAACTGGGAGCTGTGAAAGTGACCTCTAGTCATGA CCCTAGTGGACCAGTGCTCTTTTTGAACCCCTAACCTTTCCTATGACTCT GTGCCCCTTCCACACTTGAGAGTGTCTTCCTCTTCTCTGATAAAGGATCT CAGGGCTGGGATGGAGGCTTGGTTAAAAGCACTTGTTGGTCTTGCAGAGC ACCAGCATTCAGTTCCCATCATCTACATCTGGGGGCCCAAACCTGCCTCT GACTCCTGCTCCAGAGGGATCTGATGCCCTCTTCTGGCCTCTATGGGCGC CCACACACATGTCTGAATATACACTTGTAGACACATACTTAACCTATAAA TAAAATCTTTTAATTTCATAAAATAAACTATCTCCTTTTTACCATTATGC ATGTGTCACAGCTCTATCTGTTGTTGTTCTTCTAAGACACAAGAATGTGG GAACTTGGGGGGTGGGCAGTGGTGACGCACACCTTTAATCCCAGCACTTG GGAGGCAGATGAAGGCGGATTTCTGAGTTCAAGGCCAACCTGGTCTACAA AGTAAGTTCCAGGACAGCCAGGGCTGCACAAAGAAACCCTGTGTCAAAAT AACCAAAGGGTGGGGGGGACGTGGGAACTTGGCAGGATGCCTTCTAGATG CCAATCCCCAAAATCTGAAGCAGTGGTCCAGAGACTCACACTGCAAGGGA AA	CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAATGCACATCCGCCCTGCCG GCTGCCAGCACAGACTATACTTGTTTTCTATGGAGAGAACGGTAAACGCA ACGAGCTGGGATGGGAGGTGGCTCAGTGGAGACAGTGCTTGACATGGACG CATGAGGATCTGAGGTGGGACCTCCAGAATCCATGTACAAAAGCCAGGCA AGGTCTTGTGTGCTTGTGTGTGCAGTCAGGCAGATCCCCAGGCAACCACA ACCCTGCCAGCCTAGCTGAACTGGTTTCAGGTCCCAGTGAGAGACCCTGT CTCAAGAAATAAGGTGGAAAGTGGCTGAAAAAGACACGAGACATTGTGCT GGCACTCGTTCGCGCGTGCACGTGCACGTGCACGCGCGCGCACACACACA TACACACACACACACACACACCGTTTCATACACATCTCTTCTTCCAGTGT CTTTCCTTACGCGGCTGCAGCAATAATTACAACAAAATGGGGGTTGGGTA CTATCTACACTTATGGCTGGATAGAAGCTTCTACTTCTTCTGTTGTTTAA TTAGGATACACCCGTTGATTTTATTGTTGTTTTCCTGTTTTCCGCTTCCC CCTTACCATATTCGTTGTCTCTCTCTTTCTTTCAAGTTTTGATACCCCTT GGTCTTTGCCTCTCCACTTCCTTTTCACTTTATTTGCCGATTGTTCGTTA CTCTCGTTGCTTGCATTTCTTTT
quality values	Open. Hide. 6 6 6 8 8 8 8 11 15 19 24 37 29 29 24 22 22 32 22 24 24 28 28 30 44 59 31 31 31 31 30 21 27 11 9 9 9 12 9 9 9 8 9 9 19 17 24 37 37 37 36 36 36 36 44 33 33 33 33 30 33 27 12 9 9 9 9 9 9 9 9 16 22 32 39 40 40 40 48 48 53 53 53 53 53 47 47 47 47 50 59 59 59 47 47 47 48 48 48 59 54 54 57 59 59 59 68 59 59 54 48 48 48 51 51 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 59 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 68 57 57 57 57 57 68 68 68 57 57 68 68 68 68 57 57 57 57 57 59 59 59 57 59 59 59 59 68 68 57 68 68 68 68 68 68 57 57 57 57 57 57 57 43 57 57 68 68 59 57 57 57 57 57 57 68 59 59 59 59 59 59 59 68 68 68 68 68 57 57 57 57 57 57 59 59 59 68 68 57 57 57 57 59 59 62 62 62 62 62 62 62 68 62 62 62 62 68 62 62 62 52 45 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 43 44 43 62 62 68 68 68 68 68 68 68 62 44 39 20 14 14 27 26 39 39 44 39 43 44 44 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 41 35 35 59 44 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 44 44 35 35 27 44 43 52 57 59 59 68 68 68 68 68 38 38 20 35 35 43 44 59 68 68 68 59 57 57 52 52 57 57 68 68 68 68 59 59 59 43 43 52 57 57 57 57 57 57 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 43 52 52 59 59 59 59 59 59 68 68 68 68 59 59 41 43 50 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 59 57 57 57 57 57 57 54 54 57 57 57 57 57 57 57 54 54 54 54 54 57 59 59 57 54 54 54 57 57 59 59 48 48 43 43 43 43 43 43 48 47 59 59 48 48 39 39 39 43 41 47 41 47 47 43 41 37 41 41 37 37 37 27 27 28 32 28 28 28 34 34 25 34 34 32 32 37 37 24 31 28 35 35 34 24 22 15 15 21 27 27 37 47 39 39 41 31 31 34 34 25 31 31 35 37 41 39 35 32 30 39 39 43 39 39 39 39 43 37 30 35 39 39 39 37 37 18 20 11 13 13 14 18 10 10 10 15 17 22 24 24 30 18 11 10 12 12 12 34 32 31 19 18 23 22 31 39 39 39 30 28 28 26 28 17 15 14 15 15 18 23 33 27 21 19 24 16 15 15 13 11 8 8 8 9 9 9 9 9 9 11 17 17 34 34 32 18 12 9 9 9 8 15 8 8 8 8 13 16 17 11 10 9 9 10 17 13 9 9 9 10 8 19 19 16 11 10 10 10 9 9 9 10 10 8 10 10 10 12 10 9 8 8 10 10	Open. Hide. 6 6 6 8 8 8 8 15 8 9 9 9 14 19 47 47 47 47 47 42 41 39 39 39 39 39 44 44 39 28 25 12 9 9 11 14 12 12 12 12 19 18 32 24 32 37 44 36 36 50 50 50 36 53 50 50 50 50 46 25 19 19 10 10 10 11 11 9 9 10 19 19 33 30 30 31 31 31 36 36 50 50 50 59 50 50 50 50 50 50 59 59 59 57 57 57 57 57 57 57 57 57 57 53 54 54 54 54 54 68 68 50 53 48 57 59 59 59 57 57 57 57 57 59 57 57 57 57 57 57 57 68 68 68 68 68 57 57 59 59 57 59 59 59 59 57 59 59 57 54 57 57 57 57 57 68 68 68 46 46 46 46 46 46 57 68 68 68 57 59 57 57 52 57 52 59 57 68 68 57 57 54 57 57 57 59 57 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 57 68 68 68 68 57 57 52 43 43 57 57 52 57 57 57 57 57 57 52 52 59 59 57 57 57 57 57 57 62 62 52 52 43 62 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 45 45 52 62 62 62 62 62 62 44 44 62 47 43 39 44 62 62 44 62 43 43 43 43 43 57 43 43 57 57 57 52 52 43 43 39 39 57 59 59 59 59 57 57 57 57 57 57 57 38 38 22 13 14 16 16 28 27 42 27 28 38 44 68 68 68 57 57 43 52 52 52 52 57 52 52 43 43 35 47 47 68 68 68 68 68 68 59 59 52 52 54 57 57 57 57 57 57 57 57 57 59 59 59 59 59 57 50 44 43 43 44 50 57 57 43 47 47 57 59 59 59 54 57 57 59 43 43 43 42 42 42 37 43 39 57 48 57 57 59 57 59 59 34 29 12 11 11 24 25 47 59 59 68 59 59 43 43 46 48 48 54 47 47 43 37 33 32 22 15 15 13 13 21 21 32 26 15 13 13 13 13 13 13 21 21 28 25 25 23 28 28 22 17 8 8 8 8 8 8 11 11 12 12 12 12 10 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 6 8 8 8 10 10 10 11 16 8 8 10 8 8 8 14 12 9 9 9 10 9 8 8 8 8 10 10 10 11 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 9 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 11 11 11 8 10 9 9 9 9 13 10 10 10 10 8 8 10 8 8 8 6 6 10 10 8 10 10 10 19 10 10 10 10 10 8 8 8 8 10 11 8 8 8 8 8 6 9 9 9 10 10 9 9 9 11 12 11 10 10 10 10 10 10 6 6 8 8 9 10 10 10 10 10 8 8 8 8 8 8 8 8 11 12 12 8 8 10 8 8 8 9 9 10 10 12 11 11 8 8 8 9 9 9 16 11 10 10 8 10 8 9 11 10 16 10 12 10 10 10 10 10 16 12 13 11 10 10 12 12 12 16 13 15 15 11 11 11 12 11 11 11 11 8 7 7 8 8 8 9 9 9 11 11 10 11 11 11 11 10 10 8 8 8 10 12 10 14 10 8 8 8 8 8 8 9 8 8 8 8 10 13 21 10 8 6 6 8 8 12 11 11 9 9 9 9 13 9 9 9 9 8 10 8 8 8 13 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no473_b01.b1 MSMg01no473_b01.b1 CHROMAT_FILE:
MSMg01no473_b01.b1 PHD_FILE: MSMg01no473_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:56 2005
         (567 letters)



>mm_chr1_122343723_122344689
          Length = 967

 Score = 1021 bits (528), Expect = 0.0
 Identities = 552/560 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   tgaaagtgacctctagtcatgaccctagtggaccagtgctctttttgaacccctaacctt 67
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 967 tgaaagtgacctctagccatgaccctagtagaccagtgctctttttgaacccctaacctt 908

                                                                       
Query: 68  tcctatgactctgtgccccttccacacttgagagtgtcttcctcttctctgataaaggat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tcctatgactctgtgccccttccacacttgagagtgtcttcctcttctctgataaaggat 848

                                                                       
Query: 128 ctcagggctgggatggaggcttggttaaaagcacttgttggtcttgcagagcaccagcat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ctcagggctgggatggaggcttggttaaaagcacttgttggtcttgcagagcaccagcat 788

                                                                       
Query: 188 tcagttcccatcatctacatctgggggcccaaacctgcctctgactcctgctccagaggg 247
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 787 tcagttcccatcatctacatctgggggcccaaacctgcctctgactcgtgctccagaggg 728

                                                                       
Query: 248 atctgatgccctcttctggcctctatgggcgcccacacacatgtctgaatatacacttgt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atctgatgccctcttctggcctctatgggcgcccacacacatgtctgaatatacacttgt 668

                                                                       
Query: 308 agacacatacttaacctataaataaaatcttttaatttcataaaataaactatctccttt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agacacatacttaacctataaataaaatcttttaatttcataaaataaactatctccttt 608

                                                                       
Query: 368 ttaccattatgcatgtgtcacagctctatctgttgttgttcttctaagacacaagaatgt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttaccattatgcatgtgtcacagctctatctgttgttgttcttctaagacacaagaatgt 548

                                                                       
Query: 428 gggaacttggggggtgggcagtggtgacgcacacctttaatcccagcacttgggaggcag 487
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 547 gggaacttggggggcgggcagtggtgacgcacgcctttaatcccagcacttgggaggcag 488

                                                                       
Query: 488 atgaaggcggatttctgagttcaaggccaacctggtctacaaagtaagttccaggacagc 547
           |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct: 487 atgaaggcggatttctgagttcgaggccagcctggtctacagagtaagttccaggacagc 428

                               
Query: 548 cagggctgcacaaagaaacc 567
           ||||||||||||||||||||
Sbjct: 427 cagggctgcacaaagaaacc 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information