BAC Information

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BAC

Clone NameMSMg01-473B13
Chromosome1 (Build37)
Map Location 164,330,159 - 164,330,723
singlet/doubletsinglet
Overlap geneDnm3
Upstream geneTnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, LOC100039703, Dnm3os
Downstream gene5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473B13.T7 (MSMg01no473_b13.b1)MSMg01-473B13.TJ (MSMg01no473_b13.g1)
ACCAG555476AG555477
length1,387766
length of high quality
(start - end)
---569 (73 - 641)
definitionCHROMAT_FILE: MSMg01no473_b13.b1 PHD_FILE: MSMg01no473_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:59 2005CHROMAT_FILE: MSMg01no473_b13.g1 PHD_FILE: MSMg01no473_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGCCCCGCCTCACAGCCGACCTCNCTCGCNCAAAGACCGACACACTCTC
CTATCAACAAGCGATGGGGTGAGTGNNGTNCTGCTTGTATCTCTCCTCGA
CGAGTGCTGTGTATGAGACTACTAGAACTACCTCTGATGCAGCATCATTG
CGACACACGAGACGCGCCAGCGATCACACCAGCAGCTCGCTCTGCGCTCA
CACACTGCTCTTCCGGATCGCTAGTCGGGACTGCGTGCGACACCGTGCGT
ACGTGTATATATGAGCTATATACATAGATACCAACATCTGCTGAACTCCA
ATCATACTAGCATAGATGGATCGTGGTCAGACGCGACAGAGCGGGCCCCG
AGAATACACGTTTGTCATCCCGATACTTACCCGTCGCCTGCTCAGAACGC
ACATACATCGAGTGCTGCTCGTTGTCATGCATCTACTTCAGCTCCACCCT
CGCCTTTGTGTAGACTTACCCATTATCATATCGATCTTGCCTTCTATCCT
CTCGTATCTTCATTGTACCTATACTACTTTCTTCGTGCTTTCGTCGTCTG
TCGTCTACTCACTATCACACGNACTTTGTCTTATGAGCGCCGTTATACTC
TCATTATATCTCCTCNGACGCGATCTGCGCTGTGCCTACTCGGCGTTACT
TCATAGCGTGCTGCGTTATGTCCTGCTGCGCGTGTGGCTACACCAACGTG
TGCACGAGATCTGACGATATGGAGACTATACGCTCACATAATGTTGAGCA
CCATCAACACCACTATGAGCTACTTGACTGGTCTCGACACAACACGNACA
TTATTATATCTATGTGGCTACATTCACGTATCTCGATCTACTTCGTGTCG
ACGGTCTGATACCGCGGTCAGCACACCAGTGTGCGTTGAGCGCACGCGAC
GTCGTAGCCGCNTGACTCCGTCGTGTACGCCATATTCGAGTACTNCGATG
CTGCTCACCGTATGATACGTCACATACATGACCTTACTACGTTCGCGACG
CACACACTACCACAGCTCGTATACTCTCACGCTACGCATACTTGTTATAT
AATACGTCTGNATAACGACCACTGAGTCAGCGTGGCGAATACGCTGCGAC
CGGCTCGCGTCGTGACACAGCATCCATAGTACAGNGCTGCATCGAGTACG
TAGACTCAGGGTGTCTCTCACACGATTCGTTGTACACACGCACACTGATG
ACAGTATTATGCTGACGCAATACCATATATACTCTCCTCTACTGTTCACC
TATCTCGACGTCGCNGAGNGAGGATGTGACTGGTGTGATGACAGAAACGA
TACGATGCTACTATACTCGCCTCCACGTCGACATGATTCGCGTACGTCAG
GAGAGTGACATAGACATCGACGACGCGAGCAACGCGN
CGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGTTGGAGCTGCTATACACAATCATT
TTAATAAGGACGGAAAGCTGGTAAGGGGATTTGAAGCCTGTGCTAGAGGC
TGATGCAGAGGTGATGTGCTGCCTGTGCGGCAGGGGCTCTAGGAACAGTG
ACCACCCCACCGTTGGTAAGGTGAGTCATCCATTTTGCTCTCAGGCAGGA
AGAGAGCCATGTGGTTGGGGTAGTACTGAATAAGGTGCCTTGTGGGGATT
ACCAAAGGAATCACTACATCAGAGGCAAAGCTGGGCCACCCGTGGCTGCT
TGGAAGACACTGTTAGCCCAGCCTGACTTTGAGTCCTGATTTGTATGCAG
TGACCAGGAGTTTTTCTTCTAGTTCCATAAATTATATATGAACAATAGAA
ATATTAGGGTGATAGCATTGAAAACAGTTGAAAGCTTCGTATCTCAGTAC
ATGTTCAGACATCTGAGTCTGATCAAAGCCGGCCTTCCGGAGCAAGACAG
CCTGCTTTCTACAAAGAATGGAATGCTAGTTTTTGCAGTAACAAATTAAC
CTCATGGTAAAAATAAAATACAACAGCAGCAGCGACAACAACAACAACAA
AAAACCCCCATGTATTTCTGAGAACATTCTTTCTTAAGAGCAGCTCTGAC
CTTGTCAGGCTTCCCACTGGCTCTGTTACTCTTCACTGAAGTGCANGGTA
CCATCCCCTCCACTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_b13.g1 MSMg01no473_b13.g1 CHROMAT_FILE:
MSMg01no473_b13.g1 PHD_FILE: MSMg01no473_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:59 2005
         (569 letters)



>mm_chr1_164329956_164330923
          Length = 968

 Score = 1023 bits (529), Expect = 0.0
 Identities = 558/569 (98%), Gaps = 4/569 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggttggagctgctatacacaatcattttaataaggacggaaagctggtaaggggattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttggttggagctgctatacacaatcattttaataaggacggaaagctggtaaggggattt 709

                                                                       
Query: 61  gaagcctgtgctagaggctgatgcagaggtgatgtgctgcctgtgcggcaggggctctag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaagcatgtgctagaggctgatgcagaggtgatgtgctgcctgtgcggcaggggctctag 649

                                                                       
Query: 121 gaacagtgaccaccccaccgttggtaaggtgagtcatccattttgctctcaggcaggaag 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaacagtgagcaccccaccgttggtaaggtgagtcatccattttgctctcaggcaggaag 589

                                                                       
Query: 181 agagccatgtggttggggtagtactgaataaggtgccttgtggggattaccaaaggaatc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agagccatgtggttggggtggtactgaataaggtgccttgtggggattaccaaaggaatc 529

                                                                       
Query: 241 actacatcagaggcaaagctgggccacccgtggctgcttggaagacactgttagcccagc 300
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 528 actacatcagaggcaaagccgggccacccgtggctgcttggaagacactgttag-ccagc 470

                                                                       
Query: 301 ctgactttgagtcctgatttgtatgcagtgaccaggagtttttcttctagttccataaat 360
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 469 ctgactttgagtcctgatttgtacgcagtgaccaggagtttctcttctagttccataaat 410

                                                                       
Query: 361 tatatatgaacaatagaaatattagggtgatagcattgaaaacagttgaaagcttcgtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tatatatgaacaatagaaatattagggtgatagcattgaaaacagttgaaagcttcgtat 350

                                                                       
Query: 421 ctcagtacatgttcagacatctgagtctgatcaaagccggccttccggagcaagacagcc 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 349 ctcagtacatgttcagacatctgagtctgatcaaagccagccttccggagcaagacagcc 290

                                                                       
Query: 481 tgctttctacaaagaatggaatgctagtttttgcagtaacaaattaacctcatggtaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgctttctacaaagaatggaatgctagtttttgcagtaacaaattaacctcatggtaaaa 230

                                        
Query: 541 ataaaatacaacagcagcagcgacaacaa 569
           |||||||||||||||||||   |||||||
Sbjct: 229 ataaaatacaacagcagca---acaacaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space:   535522
Effective search space used:   535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)