CTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGACACCGC
GGAATTCCTAACCCCTATCAACAGCTTCGGTGAAGTAGCTGGATATAAAA
TTAACTCAAACAAGTCAATGGTCTTTCTCTACACAAAGAATAAACAGGCT
GAGAAAGAAATTAGGGAAGCAACACCCTTCTCAATAGTCACAAATAATAT
AAAATATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATA
AGAACTTCATGTCTTTGAAGAAAGAAATTTAAGAACATCTCAGAAGATGG
AAAGATCTCCCATCCTCATGGATTGTTTTTTATCAACATTGTAAAAATGG
CTCTCTTGCCAAAAGCAATGTACAGATTCAATGCAATCCCATCAAAATTC
CAACTCAATTCTTCAATGAATTACAAAGAGCATTCTGCAAATTCATCTGG
AATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAAC
CTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTG
TGATTATAACTGCATGGTACTGGCATAGTGACAGACCAGTAGACCAATGG
AATAGGATTGAAGACCCAGAAATGAACCCACACACCTATGGTTCACTTGA
TCTTCGATAAGGGAGCTTAAATCTTTCTGTGGAAAAAGACAGCTCTTTCA
ACAATTGGTGTCGGCCCAACTGTTGGCTAATCTGTAAAAGAATGCGAATT
G

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTTCTCTCTTAAATTCAT
GGCCACTAGAATGTTCATTTATTTTCTAGATATTTAAATATGTATATGAA
AATAAATATTCATGTATTTCTAAATATACACAACCTGCTTAATATAAATA
AAGTTACTTGTGTGTTTAACATACAATGTCAGAATTAGCCAGTACCAAAG
AGACATATTGACAGACTTTTGTTTTAGTTGCTGCTGCTGTTGTTTCTTTT
ACAGTGAAAGTATGGCTATTTTCCTAGCAAAAGCAGTCCTTTCTACTGTG
ACACTGATACCCCAGAATGGCCTAAGCCTTTCTGATCCTGATGTCTTAAG
CAGGGATTTTTACAACTGCCTCTCTGAGTCGATTGTAGCCTCATTACTCT
CCCAGCACATCTTTGCCAGCCTTGTCTTCAAGGAACAGGATCTCACAGTA
ACTCTTTTGGCTTTACCACTATAGAAAAATGGGTTTGTCAGGGTCACTAA
TCTCCACAGTATTGTCTTATCTTTTTCTAACATATTTACATCTTCACTAA
TCTTCAGTAATTTTATTCAGCCTAATCGCTTTAAATTAACTCTACTGATA
AGTGCTGGTTGAGTGTCTCTAACTAACATTGATATCTTTAAAATNAAACT
TGGGATTTTATATAAGGATTATCCAAATTAATAAAAAGTAAGCTTTAATA
CCATA

Query= MSMg01no473_h19.g1 MSMg01no473_h19.g1 CHROMAT_FILE:
MSMg01no473_h19.g1 PHD_FILE: MSMg01no473_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:35 2005
         (617 letters)



>mm_chr1_27164633_27165644
          Length = 1012

 Score = 1089 bits (563), Expect = 0.0
 Identities = 602/617 (97%), Gaps = 7/617 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgttctctcttaaattcatggccactagaatgttcatttattttctagatatttaaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 201 cattgttctctcttaaattcatggccacgagaatgttcatttattttatagatatttaaa 260

                                                                       
Query: 61  tatgtatatgaaaataaatattcatgtatttctaaatatacacaacctgcttaatataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tatgtatatgaaaataaatattcatgtatttctaaatatacacaacctgctcaatataaa 320

                                                                       
Query: 121 taaagttacttgtgtgtttaacatacaatgtcagaattagccagtaccaaagagacatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagttacttgtgtgtttaacatacaatgtcagaattagccagtaccaaagagacatat 380

                                                                       
Query: 181 tgacagacttttgttttagttgctgctgctgttgtttcttttacagtgaaagtatggcta 240
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tgacagacttttgtcttagttgctgctgctgttgtttcttttacagtggaagtatggcta 440

                                                                       
Query: 241 ttttcctagcaaaagcagtcctttctactgtgacactgataccccagaatggcctaagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcctagcaaaagcagtcctttctactgtgacactgataccccagaatggcctaagcc 500

                                                                       
Query: 301 tttctgatcctgatgtcttaagcagggatttttacaactgcctctctgagtcgattgtag 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attctgatcctgatgtcttaagcagggatttttacaactgcctctctgagtcgattgtag 560

                                                                       
Query: 361 cctcattactctcccagcacatctttgccagccttgtcttcaaggaacaggatctcacag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 cctcattactctcccagcacatctttgccagccttgtcttcaaggaacaggatctcaccg 620

                                                                       
Query: 421 taactcttttggctttaccactatagaaaaatgggtttgtcagggtcactaatctccaca 480
           ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 621 taa-tcttttggctttaccactatagaaaaatgcgtttgtcagggtcactaatctcca-a 678

                                                                       
Query: 481 -gtattgtcttatctttttctaacatatttacatcttcactaatcttcagtaattttatt 539
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgtattgtcttatctttttctaacatatttacatcttcactaatcttcagtaattttatt 738

                                                                       
Query: 540 cagcctaatcgctttaaattaactctactgataagtgctggttgagtgtctctaactaac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 739 cagcctaatcgctttaaattaactctactgataagtgctggttgagtgtctctaac---- 794

                            
Query: 600 attgatatctttaaaat 616
           |||||||||||||||||
Sbjct: 795 attgatatctttaaaat 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1012
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1002
Effective search space:   608214
Effective search space used:   608214
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)