Query= MSMg01no473_m09.b1 MSMg01no473_m09.b1 CHROMAT_FILE:
MSMg01no473_m09.b1 PHD_FILE: MSMg01no473_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:59 2005
(264 letters)
>mm_chr1_125934394_125935057
Length = 664
Score = 443 bits (229), Expect = e-129
Identities = 250/261 (95%), Gaps = 7/261 (2%)
Strand = Plus / Plus
Query: 1 agataaaaaccttttatcagtcttacataaatgtaaaatgattggagtggcagttgatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agataaaaaccttttatcagtcttacataaatgtaaaatgattggagtggcagttgatgt 260
Query: 61 ttgatttcatattgcttgtggaaacataaacgtttctgaggatctaggacagctcaccca 120
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatttcatattgcttataaaaacataaacgtttctgaggatctaggacagctcaccca 320
Query: 121 gagatatgaataagacaaatctccatcttaactaccttttcatttccacaaatgctaaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatatgaataagacaaatctccatcttaactaccttttcatttccacaaatgcta--- 377
Query: 181 gctattacttatctctgtctatacctagcaatgataatcaccatggaggtgaatgtagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ----ttacttatctctgtctatacctagcaatgataatcaccatggaggtgaatgtagtt 433
Query: 241 catgagaagatacctgccatg 261
|||||||||||| ||||||||
Sbjct: 434 catgagaagataactgccatg 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space: 167025
Effective search space used: 167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_m09.g1 MSMg01no473_m09.g1 CHROMAT_FILE:
MSMg01no473_m09.g1 PHD_FILE: MSMg01no473_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:59 2005
(464 letters)
>mm_chr1_126104609_126105471
Length = 863
Score = 843 bits (436), Expect = 0.0
Identities = 452/460 (98%), Gaps = 8/460 (1%)
Strand = Plus / Minus
Query: 1 tgttcccagcagctgtgtggagaaccttatgacccagctccacgtgacccaatacccact 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 459 tgttcccagcagctgtgtggagaacc-tatgacccagctccacgtgacccaatacccact 401
Query: 61 gctggactccacatgctccttcacattcagggcagttccccctccatcacacatacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gctggactccacatgctccttcacattcagggcagttccccctccatcacacatacacac 341
Query: 121 ataaaaacaataaaataaaaatttagaaataaaacaattagtagagagtatatattaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ataaaaacaataaaataaaaatttagaaataaaacaattagtagagagtatatattaggt 281
Query: 181 cacaatttcagcagatactcaaagcatatactcaaagcaataggaacttaaataggcaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cacaatttcagcagatactcaaagcatatactcaaagcaataggaacttaaataggcaca 221
Query: 241 tcacaacagccactgttaag----acacacacacacacacacacacatatacacacacac 296
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 220 tcacaacagccactgttaagacacacacacacacacacacacacacatatacacacacac 161
Query: 297 acacacacaacacacacacatacacacacaca--acacacacatacacacacacatacac 354
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 160 acacacacaacacacacacatacacacacacaacacacacacatacacacacacatacac 101
Query: 355 acacacatacacacacacacatacacacacacaacacacacacacatacacacacacaga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 acacacatacacacacacacatacacacacacaacacacacacacatacacacacacaga 41
Query: 415 cacacaaaacacacacacaacaggcacaca-acacaacaa 453
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 40 cacacaaaacacacacacaacaggcacacacacacaacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 213
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
