BAC Information

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BAC

Clone NameMSMg01-473N13
Chromosome1 (Build37)
Map Location 28,194,716 - 28,195,039
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473N13.T7 (MSMg01no473_n13.b1)MSMg01-473N13.TJ (MSMg01no473_n13.g1)
ACCAG556049AG556050
length760738
length of high quality
(start - end)
324 (325 - 648)553 (80 - 632)
definitionCHROMAT_FILE: MSMg01no473_n13.b1 PHD_FILE: MSMg01no473_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:05 2005CHROMAT_FILE: MSMg01no473_n13.g1 PHD_FILE: MSMg01no473_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTGGGCGCTAAACGACTCACACTTTCATAACACCGCGGAATTC
AACATTTTTTCAACAACTATTGTCAGTAAGGAACCTGGCTATTTAGAGTT
TTATATAAGAATTTATCTTATTATGTTATTATAAAGTTTTATTGTATTAA
ACCTGTTCTTGTCTGTATGTTGATAACAAATTCAATTTCTTTCTTTTTCA
TAAAAAAAAAAACCAAAAAAAAATCATGTCATTTGTACAATTAAAATTAA
TGTATAAGTAAGTATTTTCTAAACGGTGTCTTATAATTTAGACAAAAATA
AAATAAAAACAAGCAAGTTCTCTTTTATGTTGGTGGATAATTTTATGGTT
TTGGTTATTCAAATATAAATATTTTGAAAAGTAATCAGGTAATTTGCTTG
ATCTACAGCCATATTTTCTCATGTAATTGTTGTGTGTGATTCTTTCTGTA
TTAATCAAGAAAAAGTGCCCAAACATAGGACATAATGAAAGCAGTGATTA
GAGGAAAATTAATTGCATTAAGTGCCCTGGTAAAGAAATTGGAGAGATCT
TACACTAGCAACTAAACATCATGCCCAATAGCTCAAGTACAAGAAGAAGC
AAACATACCAAAGAGGAGTAGACCTTAGGAAATAGTCAAACTCAGGGAGG
AACTCTAAGATGATAGAACAAAGAATCAATAAAACTAAAAGCTGGCTCTT
TGAGAGAATCAACAAGATAAATAAACCTCTAGCCAAACTAACTAAAGGGC
CAGAGGCAGT
NNNCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTA
TCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAG
ATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATT
GATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTA
CTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCA
AGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCT
GAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAA
TAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTG
TGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATA
GAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGAC
TATTAATAACTGCTTCTATTGCTTTAGGTGATATGGGACTGTTTAGATGG
TCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTT
GTCCATTTTGTCCAGTTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTANA
AGGATCTGATGGTGTTTTGGATTTCCTTCCGATCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_n13.b1 MSMg01no473_n13.b1 CHROMAT_FILE:
MSMg01no473_n13.b1 PHD_FILE: MSMg01no473_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:05 2005
         (324 letters)



>mm_chr1_28194698_28195422
          Length = 725

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%), Gaps = 1/324 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tatgttggtggataattttatgg-ttttggttattcaaatataaatattttgaaaagtaa 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 342 tatgttggtggataattttatggtttttggttattcaaatataaatattttgaaaagtaa 283

                                                                       
Query: 61  tcaggtaatttgcttgatctacagccatattttctcatgtaattgttgtgtgtgattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcaggtaatttgcttgatctacagccatattttctcatgtaattgttgtgtgtgattctt 223

                                                                       
Query: 121 tctgtattaatcaagaaaaagtgcccaaacataggacataatgaaagcagtgattagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tctgtattaatcaagaaaaagtgcccaaacataggacataatgaaagcagtgattagagg 163

                                                                       
Query: 181 aaaattaattgcattaagtgccctggtaaagaaattggagagatcttacactagcaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aaaattaattgcattaagtgccctggtaaagaaattggagagatcttacactagcaacta 103

                                                                       
Query: 241 aacatcatgcccaatagctcaagtacaagaagaagcaaacataccaaagaggagtagacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aacatcatgcccaatagctcaagtacaagaagaagcaaacataccaaagaggagtagacc 43

                                   
Query: 301 ttaggaaatagtcaaactcaggga 324
           ||||||||||||||||||||||||
Sbjct: 42  ttaggaaatagtcaaactcaggga 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 725
Length adjustment: 9
Effective length of query: 315
Effective length of database: 716
Effective search space:   225540
Effective search space used:   225540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)