BAC Information

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BAC

Clone NameMSMg01-474D09
Chromosome1 (Build37)
Map Location 68,762,839 - 68,933,956
singlet/doubletdoublet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474D09.T7 (MSMg01no474_d09.b1)MSMg01-474D09.TJ (MSMg01no474_d09.g1)
ACCAG556326AG556327
length749732
length of high quality
(start - end)		234 (78 - 311)299 (323 - 621)
definitionCHROMAT_FILE: MSMg01no474_d09.b1 PHD_FILE: MSMg01no474_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:35 2005CHROMAT_FILE: MSMg01no474_d09.g1 PHD_FILE: MSMg01no474_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,933,723 - 68,933,956)(68,762,839 - 68,763,137)
sequence
CCTCAAATATTGGGGTCGTTATAAGAATCACTACTACGACACCATCCGNG
GAANNCTGCTATTTCCCCGCAATCAGATAATATTTTTCCCTTCAAAATTT
TACTATTTTTATTATTAGTTTATCATTACTGTGATTTTATGTTAATTTCT
TAATGTTATAGTTTGCTGTTATAGGTGCTTGGTACTGCTTGTAATGTTTT
ATTACAGTATTGATCTTTTAAGGGCTTTATTATGTCAATAGCTATATTTA
TTAAGCAAAAAAAGCCACCCATGCATTGAAGACATCAATATATCAGACTT
TTAATTGACAACTTGTATAGTTTGCTTGTGATTTATAGCTCGATTACAAA
CTCCTACTTTCTGCTCTGCCAATGGAATTGGCAATATTTTTTTTCAGCCC
AGATGGTGCATTATCCTTGTCCAGCTGGTTCTCTCCGTGTTGCCTCATCG
CATATCCATGCTGCTAATATTGCTAAGTATGACCCATATCTTCACCTCAC
ACGCTTAGGGCTTCCTGCCCACCTTTGCCCCCTCCACCTATCGTATTTAT
TCTCATTGAATATCTTGTTTCTTTAACTTCATTCTCTTCCCCTTCCCCTA
TCCTCCATTTATTTCTCTTGTACTTGACCCATCACTTCGTTGCACATTAC
TCTTTTAATTAATCATAATCTATTTCTCCTCTTCGCCCCATATTTATCTC
CTCCTGATTCCGTTTATTTTTATTTTCTCTCCTACTCTTCTATCGTTCG

CCCGATGAAGTGGGAGGCCTGGNGGNCGCCTGGTTCCCAAACTTAGGTGA
ACTATAGAAGTTTCGCGAACATCATAATGGAGGTGATAATTTCTGATGGG
CAAGTTTTATAAAATTCTAGGATTTGAAAATACTCCCCAAAGATGGTGCA
AAGCCCTGGAGAAAGCATCCAAGTCATAGAGATGATTCATAATTAGTATG
AGGGAGATACAGAAATCAATGGAATATTAATTGTTTTGTGATAGAAATTA
AAGAAAAGAAGAAAGTCTGTGACTCAACTACTAATATAGTTTTAACTTTA
CTCAGTGCAGGTCTTATAATACAGAGTATTTTTCAATAAACTTCCCAAAA
GTTTTGAGCTTTAGATCTAATGATACAATCTTATAAGGAGAACACAAAAT
TATTTCCACACATAATATTTTGACAGAGTTTGAAAAAATGTAAGGAAAAG
AGAAGAATCAAGAAGAGTGTCACAGTATTTTTGTTTGTTTGTTTGTAACT
TCCCAAAGGAAACAAGTTATCTTTACAGAANATAATTCAGGTTCAGACAT
GTACTGAAACTTAAGGGTTAATGACACTAGTCAACAGAGTGTTACAAAAG
AGAGAGAAATCAAAGTAAAAGTTTCCAGGAAAATATTGAGTTTACAGTCT
TGTTAGGCTGCAATCAGTGTAGCTTTCAGACAAGAAAAGTTATAAGTTAA
AAATTTTAATAGAAAAAAAATGTATTGCAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_d09.b1 MSMg01no474_d09.b1 CHROMAT_FILE:
MSMg01no474_d09.b1 PHD_FILE: MSMg01no474_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:35 2005
         (234 letters)



>mm_chr1_68933523_68934156
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatatttttcccttcaaaattttactatttttattattagtttatcattactgtgattt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 434 taatatttttcccttcaaaattttactatttttattattagtttattattactgtgattt 375

                                                                       
Query: 61  tatgttaatttcttaatgttatagtttgctgttataggtgcttggtactgcttgtaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tatgttaatttcttaatgttatagtttgctgttataggtgcttggtactgcttgtaatgt 315

                                                                       
Query: 121 tttattacagtattgatcttttaagggctttattatgtcaatagctatatttattaagca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 314 tttattacagtattgatcttttaagggctttattatgtcaatagctatatttaaaaagca 255

                                                                 
Query: 181 aaaaaagccacccatgcattgaagacatcaatatatcagacttttaattgacaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaaaagccacccatgcattgaagacatcaatatatcagacttttaattgacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no474_d09.g1 MSMg01no474_d09.g1 CHROMAT_FILE:
MSMg01no474_d09.g1 PHD_FILE: MSMg01no474_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:35 2005
         (299 letters)



>mm_chr1_68762639_68763337
          Length = 699

 Score =  572 bits (296), Expect = e-168
 Identities = 298/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtatttttcaataaacttcccaaaagttttgagctttagatctaatgatacaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtatttttcaataaacttcccaaaagttttgagctttagatctaatgatacaatctt 260

                                                                       
Query: 61  ataaggagaacacaaaattatttccacacataatattttgacagagtttgaaaaaatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaggagaacacaaaattatttccacacataatattttgacagagtttgaaaaaatgta 320

                                                                       
Query: 121 aggaaaagagaagaatcaagaagagtgtcacagtatttttgtttgtttgtttgtaacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaaagagaagaatcaagaagagtgtcacagtatttttgtttgtttgtttgtaacttc 380

                                                                       
Query: 181 ccaaaggaaacaagttatctttacagaanataattcaggttcagacatgtactgaaactt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ccaaaggaaacaagttatctttacagaaaataattcaggttcagacatgtactgaaactt 440

                                                                      
Query: 241 aagggttaatgacactagtcaacagagtgttacaaaagagagagaaatcaaagtaaaag 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagggttaatgacactagtcaacagagtgttacaaaagagagagaaatcaaagtaaaag 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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