Query= MSMg01no474_e24.b1 MSMg01no474_e24.b1 CHROMAT_FILE:
MSMg01no474_e24.b1 PHD_FILE: MSMg01no474_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:43 2005
(547 letters)
>mm_chr1_45403201_45404147
Length = 947
Score = 868 bits (449), Expect = 0.0
Identities = 522/551 (94%), Gaps = 12/551 (2%)
Strand = Plus / Plus
Query: 5 gaattcattttaatgtcctaatcattaaatttcaaatatttttcttaaatcactcctgtt 64
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcattttaatgaactaatcattaaatttcaaatttttttcttaaatcactcctgtt 264
Query: 65 tttatctactgtgacatgtttaattttatttttcattaccaagatatatttattatataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttatctactgtgacatgtttaattttatttttcattaccaagatatatttattatataa 324
Query: 125 aattagtcttaatattttcaaaatttaaaatactatttaaaatattt--tttcagttttt 182
| |||||||||||||||||||| |||||||||||||||||||| | ||| |||||||
Sbjct: 325 agttagtcttaatattttcaaattttaaaatactatttaaaat---tactttaagttttt 381
Query: 183 aaatatcttgagagagaccactgcttttactcagactatcttctgggcattaattaaaat 242
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaatatcttgagagagaccgctacttttactcagactatcttctgggcattaattaaaat 441
Query: 243 aagaaataagtacaagttaagttaaaatatgccataaatatggactatagtgttatcttt 302
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 aagaaataagtacaaattaagttaaaatatgccataaatatggacaatagtgttatcttt 501
Query: 303 aaaataaaagatgatatttagaaaaataaa-cacaccaatctgtacatcatcag-caatg 360
||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||
Sbjct: 502 gaaataaaagatgatatttagacaaataaaacacaccaatctgtgcatcatcagtcaatg 561
Query: 361 gtaacactgtatttttctatttccatgcttttatggtgcttactagctttttacttcaga 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 562 gtaacactgtatttttctatttccatgcttttatggtgcatactagctttttacttcaga 621
Query: 421 aatatcaaccagttgtgctacatagttcaaattgatacagtagtactccgtacactgaac 480
|||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct: 622 aatatcaaccagttgtgctacatacttcaaattgatacagtagtactccatgcactgaac 681
Query: 481 caagtaacaagcaaatcttctggttcagcctccacttctaaat-----aactaattcaca 535
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 682 caagtaacaagcaaatcttctggttcagcctccacttctaaattttataactaattcaca 741
Query: 536 ttatctctttg 546
|||||||||||
Sbjct: 742 ttatctctttg 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_e24.g1 MSMg01no474_e24.g1 CHROMAT_FILE:
MSMg01no474_e24.g1 PHD_FILE: MSMg01no474_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:43 2005
(249 letters)
>mm_chr1_45545451_45546099
Length = 649
Score = 426 bits (220), Expect = e-124
Identities = 241/248 (97%)
Strand = Plus / Minus
Query: 1 cacaggagtccccagaattcttttctttatgatgtgcctttagtgccttcctttgcctgc 60
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 448 cacaggagtccccagacttcttttctttatgatgtgccttcagtgccttccttttcctgc 389
Query: 61 tgtaggtgactaaatatttttgatttgtcttttcttcctaaggaagttcaacaacttaat 120
||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 388 tgtaggtgattaaatatttttgatttgtcttttcttcctaaagaagttcaagaacttaat 329
Query: 121 tagtatttgaacagaatctttgcttctgtgcagttggcagtgtaggaaaatcaggggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tagtatttgaacagaatctttgcttctgtgcagttggcagtgtaggaaaatcaggggaga 269
Query: 181 gggtttggagagtattaagtaaagaagagtgcaagcaattaattccaatctatggttgag 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gggtttggagagcattaagtaaagaagagtgcaagcaattaattccaatctatggttgag 209
Query: 241 ataggtga 248
||||||||
Sbjct: 208 ataggtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
