BAC Information

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BAC

Clone NameMSMg01-474I18
Chromosome1 (Build37)
Map Location 53,681,826 - 53,682,065
singlet/doubletsinglet
Overlap geneLOC100042162
Upstream gene5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866
Downstream geneDnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474I18.T7 (MSMg01no474_i18.b1)MSMg01-474I18.TJ (MSMg01no474_i18.g1)
ACCAG556584AG556585
length736740
length of high quality
(start - end)
187 (127 - 313)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no474_i18.b1 PHD_FILE: MSMg01no474_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:03 2005CHROMAT_FILE: MSMg01no474_i18.g1 PHD_FILE: MSMg01no474_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:03 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNCCCTCTATAATTGCGGCCGCTATACGAATCACTTTTTCAAACCAGCCG
CGGAATTCCTGAATTACAAAAGACTTTTATCAAAGATGGGTGTTGGATTT
TGTCAAATGCATTCTCAGTTTCTCACGAGATGATCATGTGGTTTTTGTCT
TTGAGTTTGTTTATATACTGGATTACGTTGATGGATTTCCGTATATTGAA
CCATCCCTGCATCCCTGGGATGAAACCTACTTGGTTAGGATGGATGATTG
TTTTGATGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTGAGGATTTTT
GCATCGATATTCATAAGTAAATTGGNCTGAAGNTCTCTATCTTTGTGGGG
TCTTTTTGTGCCCTAGGTATCAGAGTAACTGTGGCTTTATAGAATGTGTT
GGGTAGAGTCACCTTCCGCTTCTATTTTGTGGAATAGTTTGTGAATAACT
GCCATTATATCTTCTTTGATGGTCCGATACATTTCTGCTCTATCCCCATC
CGGCCTTGGGCTTTCTTTGCCTGCGATACTCTTAATGATTGCTTCTATTT
CTTCTGCTGCATATTACGCCGCCTAATATTCTTCTACTTGATCTTGACCC
CTTCCTCTAGTTGCCATCGTATTCTTGTTTCAAAATCTTCCCCTTTTTTT
TTTTTTTTTTTTCACTTATCCTACATAAACTACACCCTCTTTCTCATCTT
ACCCGCATTGCCTGTTGTGTATGCTCACTTCTCTAT
TTCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTATACTTAATCAGTGTTTT
CCCCATGCAAGTGAGGTAGTTTGGTGACAAAGTTTGACCAGGTACAGTCT
TTCTTCCTTCAGTTGATTTGGCCAGTTGACTACAGACCAGAAAGTCCCAG
TGGGATCCAGGTTCAATTTAAAACCATTCTTCTGGGATTAGGGAGATGGC
TCAGTTTTTAAAAGGACCCAAGGTGTTGAAGGAGTTTGCAGCCCCATAGG
AGGAACCACAATATGATTTTTATCTAGTAACCCCAGAGCTCCCAGAGACT
AAATCAACAACCAAAGAGAACATGTGGCAGGACTCATGGCTCCAGCTGCA
TATGTAGCAGAGGATGGCCTAGTTGGTCATCAATGGAGGGGGGGGGGGGA
GAGNNNNCTCTNNNTTTNNTTNTTTTTTGCTTTTGTGTTCTGTCTCTCTT
GCTCCTCTTCGTGTCTCGTCTGTTTTTCTGTCCCCCTTTTTCCCTTTTTC
TTCTTTCTTCTGTTGTCTTCTCTTCTTCTTTCTTCTTTGCTTCTTTTCTC
CTTTCTCCTCTTTTTCCTCTCTTCCTTCGCTTTCTTCCCCTTGTGTTCTC
TCTTTTTTTTTTTTCTTCCCTGTTTTCTCTTCTCTCTCTCTTCGTCTCTC
TCTTCTTTTCCTCCCTCTTCTCCTCTTCTCTCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_i18.g1 MSMg01no474_i18.g1 CHROMAT_FILE:
MSMg01no474_i18.g1 PHD_FILE: MSMg01no474_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:03 2005
         (239 letters)



>mm_chr1_53681720_53682359
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctatacttaatcagtgttttc-cccatgcaagtgaggtagtttggtgacaaagttt 59
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 346 tctgctatacttaatcagtgttttctcccatgcaagtgaggtagtttggtgacaaagttt 287

                                                                       
Query: 60  gaccaggtacagtctttcttccttcagttgatttggccagttgactacagaccagaaagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaccaggtacagtctttcttccttcagttgatttggccagttgactacagaccagaaagt 227

                                                                       
Query: 120 cccagtgggatccaggttcaatttaaaaccattcttctgggattagggagatggctcagt 179
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 226 cccagtgggatccaggttcaatttaaaactattcttctgggattagggagatggctcagt 167

                                                                       
Query: 180 ttttaaaaggacccaaggtgttgaaggagtttgcagccccataggaggaaccacaatatg 239
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 166 ttttaaaaggacccaaggtgttgaaggagtttgcagccccgtaggaggaaccacaatatg 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space:   145130
Effective search space used:   145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)