NGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCTTGATTTTCCCAGACTTTTATCATGAATGGGTGTTGGATTTT
GTCAAATGCTTTCTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTT
TGAGTTTGTTTATATACTGGATTACATTGATGGATTTCCGTATATTGAAC
CATCCCTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGT
TTTGATGTGTTCTTGGATTCGATTAGCGAGAACTTTATTGAGGATTTTTA
CATCGATATTCATGAGGGAAATTTTTCTGAAGTTCTCTATCCTTGTTGGG
TCTTTTTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTT
GGGTAGAGTACCTTCTACTTCTATTTTGTGGAATAGTTTGTGAAGAACTG
GGATTAGATCTTCTTTGAAGGTCTGGAAGAACTCTGCACTAAACCCATTT
GGTCCTGGGCTTTTTTTGGTTGGGAGACAATTATGGATGCTTCTATTCCT
TCTAGCGACATGCAACTCTCTTATCATTATATTGAGCTCGCTTTACCTTC
CCCCCTGGACCACGCCAAAAACTTTTCCCTTTCTCCCTGTCCTCTTTTTT
TTTTTATTTAATCTTTTCTTTATTAATCTTTTCGTCTCTATCCTTCTTCT
TCCTCTTTCTTGCCTTACTTCCTTCCACTCTACTCTTTCCCTTTCCCCG

NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGCTGGGCTAGTGGTACTTC
AGCAAAGAGAAAAATGAGAAAGTGTTTCAGGTGGGTAATCTTGCATTTAT
GGATCTAAATATATGATATTTTAAGCACTTTTATGGGATGTTTAAAAAAT
AACTTCCTGTAAAAACAAACCTAGCTTCCAGTCTGTTATTCTCTCCCTAT
AATATAATTACATGGTTAGCTTGAAACTTGTTCTGCACAATTTTCCGATC
AACAATCCCAATAGTAAAGGGTGTAAACAAACTCTATACCTAAGAACCTT
GGATACAGATCTTTAAAAAATCCCCCAAAGCACTGCATTTTATTTTACTT
TGTCTGAATTTTTAAAAAATTAGTATTTCACTTTCTTTTATATATAGTAT
TTAAAAAAATAATCTTCAAGAGAAAAGAAAAAAAGTAACTAGGAAACTAG
AAAATAAATAGAAAGCTTTGCTAATTTACTTCCATTGCNGAAGAAAAGAA
AATATTAACTACTGTTGAGGTTTGGGCTTTTGCTATGGATTGGGGGCCCC
CAAGGCTGTAAGCCCCCAGAGAAGAAAAAATCTGCTTGAAACCCAGGGGG
AAATGAAAGTTGCCCCAAAATTTAAAAAATTGGGGGGAAAAAAAGCCCTA
CCCTCTCTATTTTTCGAAAAAAAAGAGGTGATATGGGCCCCGTTTTGTGG
TGTTCTCNCNA

Query= MSMg01no474_m22.g1 MSMg01no474_m22.g1 CHROMAT_FILE:
MSMg01no474_m22.g1 PHD_FILE: MSMg01no474_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:23 2005
         (415 letters)



>mm_chr1_196929884_196930698
          Length = 815

 Score =  781 bits (404), Expect = 0.0
 Identities = 413/416 (99%), Gaps = 1/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgctgggctagtggtacttcagcaaagagaaaaatgagaaagtgtttcaggtgggtaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 201 cgtgctgggctagtggtacttcagcaaaaagaaaaatgagaaagtgtctcaggtgggtaa 260

                                                                       
Query: 61  tcttgcatttatggatctaaatatatgatattttaagcacttttatgggatgtttaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgcatttatggatctaaatatatgatattttaagcacttttatgggatgtttaaaaa 320

                                                                       
Query: 121 ataacttcctgtaaaaacaaacctagcttccagtctgttattctctccctataatataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacttcctgtaaaaacaaacctagcttccagtctgttattctctccctataatataat 380

                                                                       
Query: 181 tacatggttagcttgaaacttgttctgcacaattttccgatcaacaatcccaatagtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatggttagcttgaaacttgttctgcacaattttccgatcaacaatcccaatagtaaa 440

                                                                       
Query: 241 gggtgtaaacaaactctatacctaagaaccttggatacagatctttaaaaaatcccccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgtaaacaaactctatacctaagaaccttggatacagatctttaaaaaatcccccaa 500

                                                                       
Query: 301 agcactgcattttattttactttgtctgaatttttaaaaaattagtatttcactttcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcactgcattttattttactttgtctgaatttttaaaaaattagtatttcactttcttt 560

                                                                   
Query: 361 tatatatagtatttaaaaaaa-taatcttcaagagaaaagaaaaaaagtaactagg 415
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatatagtatttaaaaaaaataatcttcaagagaaaagaaaaaaagtaactagg 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)