Query= MSMg01no474_n02.b1 MSMg01no474_n02.b1 CHROMAT_FILE:
MSMg01no474_n02.b1 PHD_FILE: MSMg01no474_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:24 2005
(493 letters)
>mm_chr1_153710168_153711060
Length = 893
Score = 861 bits (445), Expect = 0.0
Identities = 477/493 (96%), Gaps = 13/493 (2%)
Strand = Plus / Plus
Query: 5 gaattcacccatctgccgcgtgatggacttaagatgtgagtctggaatgtctaattcttc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcacccatctggcgcgtgatggacttaagatgtgagtctggaatgtccaattcttc 264
Query: 65 tgcccgccagctgttctgtgtatcatgcaacctcgtctacaaaactgtactctgcgctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcccgccagctgttctgtgtatcatgcaacctcgtctacaaaactgtactctgcgctgg 324
Query: 125 ctgcagaggtcactttctccatagcagctgctgtggtgactttaaaatatgtccacaca- 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgcagaggtcactttctccatagcagctgctgtggtgactttaaaatatgtccacacag 384
Query: 184 caaa-----gctttattttttccccctctgagagagggagagagctgaattctgaggtag 238
| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 c---ctttggctttattttt-ccccctctgagagagggagagagctgaattctgaggtag 440
Query: 239 attatgatttgaacttagcaacttacttccagcaaacagatatggaggaaaggacagagt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatgatttgaacttagcaacttacttccagcaaacagatatggaggaaaggacagagt 500
Query: 299 gacttccaagatcagacggaagtgcatgggaactttctgatgtcctgggggtgtgaggga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacttccaagatcagacggaagtgcatgggaactttctgatgtcctgggggtgtgaggga 560
Query: 359 ggaggtcagctgccaccttatgagggccttcagcggctgtaggagagatccctgtggtgc 418
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 561 ggaggtcagctgccaccttatgagggccttcagc---tgtaggagagatccctgcggtgc 617
Query: 419 ggtcaaaggccttggttcaggctctgccgacagccgctgaaagactatcggtccttgttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggtcaaaggccttggttcaggctctgccgacagccgctgaaagactatcggtccttgttt 677
Query: 479 gggaggaagcacg 491
|||||||||||||
Sbjct: 678 gggaggaagcacg 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_n02.g1 MSMg01no474_n02.g1 CHROMAT_FILE:
MSMg01no474_n02.g1 PHD_FILE: MSMg01no474_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:24 2005
(243 letters)
>mm_chr1_153882389_153883031
Length = 643
Score = 458 bits (237), Expect = e-133
Identities = 243/247 (98%), Gaps = 4/247 (1%)
Strand = Plus / Minus
Query: 1 atatcagttcatagatgaactcaaaaaaattaattcctctgtggtgtactgctttgtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atatcagttcatagatgaactcaaaaaaattaattcctctgtggtgtactgctttgtata 484
Query: 61 tgcaaattcgtgtggtttgttgttgttgttgttgtt----ttttggaattcaggcttttg 116
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 483 tgcaaattcgtgtggtttgttgttgttgttgttgttgttgttttggaattcaggcttttg 424
Query: 117 attttcatcttatcagttcaggggcacataatttaagcacatcatggactacctcacagc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 attttcatcttatcagttcaggggcacataatttaagcacatcatggactacctcacagc 364
Query: 177 atcctcaattattattgcatgtttgattcttcttcttctctggtctctgctgcagacttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atcctcaattattattgcatgtttgattcttcttcttctctggtctctgctgcagacttt 304
Query: 237 catcagg 243
|||||||
Sbjct: 303 catcagg 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
