Query= MSMg01no474_n04.b1 MSMg01no474_n04.b1 CHROMAT_FILE:
MSMg01no474_n04.b1 PHD_FILE: MSMg01no474_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:24 2005
(271 letters)
>mm_chr1_167276191_167276861
Length = 671
Score = 493 bits (255), Expect = e-144
Identities = 264/267 (98%)
Strand = Plus / Minus
Query: 5 gaattcaaagtattccccctgcgttggcctccgaagtggtggttttacagacatgagcca 64
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gaattcaaagtaatcctcctgcgttggcctccgaagtggtggttttacagacatgagcca 483
Query: 65 ccaggtccagcctcttctagctctttaccaaaaatgtgtaaatgatgaaaaccaagaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccaggtccagcctcttctagctctttaccaaaaatgtgtaaatgatgaaaaccaagaatt 423
Query: 125 ctccacctgcttgctcctcctatgctgtctcccatagcatcatttgctatataattagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctccacctgcttgctcctcctatgctgtctcccatagcatcatttgctatataattagag 363
Query: 185 ctcacccagtaaagagtgcgtgcgcctgtgcctgctgtggctgcccttgcttcatccttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctcacccagtaaagagtgcgtgcgcctgtgcctgctgtggctgcccttgcttcatccttg 303
Query: 245 aggctgctgcagcttgttactgcttag 271
||||||||| |||||||||||||||||
Sbjct: 302 aggctgctgtagcttgttactgcttag 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no474_n04.g1 MSMg01no474_n04.g1 CHROMAT_FILE:
MSMg01no474_n04.g1 PHD_FILE: MSMg01no474_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:24 2005
(568 letters)
>mm_chr1_167121542_167122507
Length = 966
Score = 1000 bits (517), Expect = 0.0
Identities = 559/582 (96%), Gaps = 17/582 (2%)
Strand = Plus / Plus
Query: 1 acttgatggaaaaaacctctctctaagctgttgtttctggcaaccctgctagcacagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 acttgatggaaaaaacctctctctaagctgttgtttctggcaaccctgctagcacagagc 247
Query: 61 tttttcaaaaatcaaaacggctaaaatagtacctagatagaacgcgtagggaacgtaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttttcaaaaatcaaaacggctaaaatagtacctagatagaacgcgtagggaacgtaatc 307
Query: 121 acaagctgtctgactggcggtcatgcacaaaggttcttttaattccaggatgcaga---- 176
|||||||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 308 acaagctgtcggactggcggtcatgcacaaaggttcttttgactccaggatgcagaagga 367
Query: 177 ---gagactcctgccaagagctatagttcaggactgcccagggaggcgagactggcagcc 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agagagactcctgccaagagctatagttcaggactgcccagggaggcgagactggcagcc 427
Query: 234 ggtaagagaggaacgctgttttatccctgagaggtatgatcagacaccctccgaccttcc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggtaagagaggaacgctgttttatccctgagaggtatgatcagacaccctccgaccttcc 487
Query: 294 ttgtcccaagaaccctttccagaaaacagaaagcctattcttccagaaaggactccactg 353
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttgtcccaagaaccctt-ccagaaaacagaaagcctattcttccagaaaggactccactg 546
Query: 354 aaaccaggccttgaatgtgactaggaagacgagtgtcagaagactcggatcgtaaggctg 413
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaaccaggccttgaatgtgattaggaagacgagtgtcagaagactcggatcgtaaggctg 606
Query: 414 ttcgtgtgtatg-------ccaactttacagctaccgaggagggacagaagacagaagta 466
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttcgtgtgtatgagtcctgccaactttacagctaccgaggagggacagaagacagaagta 666
Query: 467 ctcacactttttcggttggcaactaanataaattagaanaaaaaaatttgttaacttttc 526
|||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 667 ctcacactttttcggttggcaactaaaataaattagaa--aaaaaattttttaacttttc 724
Query: 527 tgggaacctcttacaggttatataactgaaaaagacttgaag 568
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgggaacctcttacaggttatataactgaaaaagacttgaag 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 966
Length adjustment: 10
Effective length of query: 558
Effective length of database: 956
Effective search space: 533448
Effective search space used: 533448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
