BAC Information

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BAC

Clone NameMSMg01-475C10
Chromosome1 (Build37)
Map Location 81,615,617 - 81,615,984
singlet/doubletsinglet
Overlap geneEG621020
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4, Col4a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475C10.T7 (MSMg01no475_c10.b1)MSMg01-475C10.TJ (MSMg01no475_c10.g1)
ACCAG557045AG557046
length882735
length of high quality
(start - end)
156 (101 - 256)367 (80 - 446)
definitionCHROMAT_FILE: MSMg01no475_c10.b1 PHD_FILE: MSMg01no475_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:50 2005CHROMAT_FILE: MSMg01no475_c10.g1 PHD_FILE: MSMg01no475_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTCTATAATTGTGGCGCTAATACGACTACTAATTCAAAAGGAGCGCG
GNAATCTTTGATTTACTGAATATGAGGCCTTTATCACATGTAGGGTTGGC
AAAGGTCTTTTTCCAATTTGTTGCCTGCCGTTTTCTCTTATTGACAGTGT
CCTTTGCTTACAGAAGCTTTGTAATTTTATGTGGTTCCATTTGTTAATTT
GAGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA
TTTTTGATTATATGTCCTCCCCCTCCTTTTTCCTACACGATCCTCTTTTA
TCCCACTTCTCCCCCCAATTTTTTTTTTTTTTTTCCAACCCCCCTTATCC
CTTTTCTCTCTCTTTTTTTTCTTTCATTCCCCTTCCTCTTTACCCCTTTT
TTTCTTTTCTCTCCTCTTTTTTTCCCCTTTTTCCCCCTCCCCTTCCGCTT
TTCCTTCTTTTCCCTGCCCCATTTCCTATCTCCTTCTTTTCTCCTACCTT
TTTCTCTCTTCTCTCTCTATCCTCACTTCTCCCTTTTTCTATTTTTTTCT
TTCCCCCCCTCTCTCTTCTATTCCTCCATCCTCTTTCTTTTCCCCCTTCT
CTCCTTTTTCTCCTTCTCCTCTATCCTCTCCATCCGTTCTTTTTCTTCCC
TAACCATTTTCTTATAAATATTTCTAACCCCCCACCTCTTTGTCCTCCCT
TCCTTTTAGTTTATCTTTCATTCTCACCTTTTATTTTTTCTTTTCCCTTC
CTCGCCACCTCGTTCTCTTCTCTTCCCCATCTTATTTTCCCCCCACTTTC
TGTACTCTTCCCTTTCTTAATATCTCATTTACCTTATTTGACTGTCCCCT
ATTCTTCTCTCACCGCTTCCTATCTTTTTTTT
TTTTTTCCCAAGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGCATGTGATCTGCTCTGA
AAATTACATGTAGGTCATAACATGGAGGTTCCATTCATCTCTCTCCTCTC
GAGAGAAGACCTTTGGGGACAAGGTCAAATGTTTCATCTTCAGCAAACAC
AAGCTTTATTGAAGACAGATTTTAGATTTGTGAGGTTCAATGCATTCAAG
GTTCATATTTGTACAGTATAAAAAGTGATATGAACAAGAAAGATTCGGAA
TTGCTCTTTTATTTGTGGTAAAGGGTTTAATGGATAGCTATATTAACACG
CCTCAGGGAGAAACTGGGCAATTACGCAGCTTGTACCCTGGGTTGAAGAC
AAACAGTTCCCTGTTCTTTCCTCTCAGCTGAGGGAAAACTGCTTGTCAAC
ACAGCCTTATGTAGAGAAGTCTCAGGACCTAGAAAGGAAGAATTAAGTGG
TGAGGGCCAGATTCCTCAGTTGTTTGAGTCCAGCATACCTAACATATACA
GTGACCCTGCCTGTGACACCGCCTATAATATGACAACAGCCCCCCTGACG
TGATTTCTTCGCTACCCCCACCTGGATCCTGTCCCCTTCCCTTTATCCCC
CTGCGTTTCCGTATTTTCTCCTTTCTTTTCCTGTCCTGCCCCCTTTCCCT
TTTTTTCCTCGTCCCTTTTTGCTTCCCCTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_c10.g1 MSMg01no475_c10.g1 CHROMAT_FILE:
MSMg01no475_c10.g1 PHD_FILE: MSMg01no475_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:50 2005
         (367 letters)



>mm_chr1_81615417_81616184
          Length = 768

 Score =  665 bits (344), Expect = 0.0
 Identities = 362/368 (98%), Gaps = 1/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggcatgtgatctgctctgaaaa-ttacatgtaggtcataacatggaggttccattcat 59
           |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 568 tgggcatgtgatctgctctgaaaatttacatgtaggtcagaacatggaggttccattcat 509

                                                                       
Query: 60  ctctctcctctcgagagaagacctttggggacaaggtcaaatgtttcatcttcagcaaac 119
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctctctcctctcgagggaagacctttggggacaaggtcaaatgtttcatcttcagcaaac 449

                                                                       
Query: 120 acaagctttattgaagacagattttagatttgtgaggttcaatgcattcaaggttcatat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acaagctttattgaagacagattttagatttgtgaggttcaatgcattcaaggttcatat 389

                                                                       
Query: 180 ttgtacagtataaaaagtgatatgaacaagaaagattcggaattgctcttttatttgtgg 239
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 ttgtacagtataaaaagtgatatgaacaagaaagattcgaaattgctcttttatttgtgg 329

                                                                       
Query: 240 taaagggtttaatggatagctatattaacacgcctcagggagaaactgggcaattacgca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 328 taaagggtttaatggatagctatattaacacgcctcagggagaaactgggcaattacaca 269

                                                                       
Query: 300 gcttgtaccctgggttgaagacaaacagttccctgttctttcctctcagctgagggaaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcttgtaccctgggttgaagacaaacagttccctgttctttcctctcagctgagggaaaa 209

                   
Query: 360 ctgcttgt 367
           ||| ||||
Sbjct: 208 ctgtttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 768
Length adjustment: 9
Effective length of query: 358
Effective length of database: 759
Effective search space:   271722
Effective search space used:   271722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)