BAC Information

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BAC

Clone NameMSMg01-475N05
Chromosome1 (Build37)
Map Location 170,232,865 - 170,403,531
singlet/doubletdoublet
Overlap genePbx1
Upstream geneTmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream geneEG383613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475N05.T7 (MSMg01no475_n05.b1)MSMg01-475N05.TJ (MSMg01no475_n05.g1)
ACCAG557561AG557562
length808778
length of high quality
(start - end)
249 (77 - 325)331 (83 - 413)
definitionCHROMAT_FILE: MSMg01no475_n05.b1 PHD_FILE: MSMg01no475_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:44 2005CHROMAT_FILE: MSMg01no475_n05.g1 PHD_FILE: MSMg01no475_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,403,283 - 170,403,531)(170,232,865 - 170,233,195)
sequence
CCTTTCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCC
GCGGAATTCCAATGATTTTCCTGAGTCTTGTCTACTCTGATTTCATGGCA
CGAAGCCACGCATGCCATGGGGAGGCAGGGAACCTTCACTTGAGCTCATG
TGTGGTAATTGCTTTATTCTGCATGAACTCGCTCTAATTCTCCCCCAAAA
CAAGAGAGAGGCTTAATCTTGCAATATTAATGACTGAATCATTTACTCCT
CTGCCTGGATGTTTTCAGGAACGTTTTCCTCTGGTTACCCTCCTCACTCT
GTATCAAAACATCAGTGAGTTCCCTGTTCTTTATTGCTCAATACCGTCTG
CATATCCTCTCTTTTGAAAAGGGAATGCTAAGAGGGAAGATTCCTTAACA
CTTTTAGTTTACTCAGCACAAACTATGAGACTTATTAATCCCTGAGACTT
ATTTTGTCTATCCTTCCTCTTGATTGCCTCACAGTGGAAATTTGTCTTCT
TTGGCTAATGTCCAGTTTTTCCCTTGGCAATTGGTTCTTTACTTGTTGAA
CACTCACCTTTTTTAACCCCTCCCTCTTCCAGCCTCTTGTTGTACCTTTC
CATTCCTTTTCCCCCCCTCTTGGACCCTTTTTTCCCACCATTTTTCCCGC
CCCGCCTCTCAAAACAAAGTCCTATCTTTCTTCCCCCCCCCTTTTTATCC
AACCTTCTCCCTATATCTTCTTGATTTACACGCCACTCCATTTCTCCTCC
GTCTTTCTATTCCCCTTTTTTTTTCCCTGGGTCTTTCTTCGCTATTTATA
TCTAACCC
NNTTTTCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGACTGAAATTAAGGGG
TTAACAAAAGATCAAAAAGAAAAAAAAGGGGGGGACACCCAAATGAGTCT
ATGGGATGGTCCTGCCAGTAAGGGCACGCGCTGCAAAGCCTGAGAGCCTC
AGTCTGAGTCCTAGACCCCATGAAGTAGATTGAGAAAACTGACTCCTGAG
AGCTGTCCTCTGACCCCCACAGAAGTGCCAAGACATAAACACAAACACAC
ACACACACACAGTTGAAAACAAAGGATGCTAACTAGTGCTTCAGGTATTT
TGTTAGAGGGACAGAGTAGAAGATAGGACTAATCTGAGGAAGTGGTTGAG
TGTGGCTTGCCTAAGGACGGGCAGATCTGGCGCACCACCATGGTTTTACA
ATGAAGTTAAAAGCTCCACCAGTGCGGGTCATCCTACGCAGATTCTGAGC
TCTATAATGTCGACCTCCTATTTTTTCTACTGCCCACGCATGTCTACTCC
TCTCCCTATCCCGCGGCGTTTTTGTTTTGCGCACAATTTCTTTACCCCTT
GTCCTCCCGTTTCCCTTCGCCCCTCCCTATCTATTTGCCCTATTCTTTCC
CCCCCCCCTCTGTCTCTTCTTCTTCGCTTTTTCGTGCCCATATTCTTCGA
CTTCTCCCTTTCCTTCTTTGTTTTTTCCCCCTCTTTCCTCTTCTCCCTTC
TCCTCTTCCCCCCTTCCCTGTATTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_n05.b1 MSMg01no475_n05.b1 CHROMAT_FILE:
MSMg01no475_n05.b1 PHD_FILE: MSMg01no475_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:44 2005
         (249 letters)



>mm_chr1_170403083_170403731
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtctactctgatttcatggcacgaagccacgcatgccatggggaggcagggaacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cttgtctactctgatttcatggcacgaagccacgcatgccatggggaggcagggaacctt 390

                                                                       
Query: 61  cacttgagctcatgtgtggtaattgctttattctgcatgaactcgctctaattctccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cacttgagctcatgtgtggtaattgctttattctgcatgaactcgctctaattctccccc 330

                                                                       
Query: 121 aaaacaagagagaggcttaatcttgcaatattaatgactgaatcatttactcctctgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaaacaagagagaggcttaatcttgcaatattaatgactgaatcatttactcctctgcct 270

                                                                       
Query: 181 ggatgttttcaggaacgttttcctctggttaccctcctcactctgtatcaaaacatcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggatgttttcaggaacgttttcctctggttaccctcctcactctgtatcaaaacatcagt 210

                    
Query: 241 gagttccct 249
           |||||||||
Sbjct: 209 gagttccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no475_n05.g1 MSMg01no475_n05.g1 CHROMAT_FILE:
MSMg01no475_n05.g1 PHD_FILE: MSMg01no475_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:44 2005
         (331 letters)



>mm_chr1_170232665_170233395
          Length = 731

 Score =  640 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgactgaaattaaggggttaacaaaagatcaaaaagaaaaaaaagggggggacacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgactgaaattaaggggttaacaaaagatcaaaaagaaaaaaaagggggggacacccaa 260

                                                                       
Query: 61  atgagtctatgggatggtcctgccagtaagggcacgcgctgcaaagcctgagagcctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagtctatgggatggtcctgccagtaagggcacgcgctgcaaagcctgagagcctcag 320

                                                                       
Query: 121 tctgagtcctagaccccatgaagtagattgagaaaactgactcctgagagctgtcctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgagtcctagaccccatgaagtagattgagaaaactgactcctgagagctgtcctctg 380

                                                                       
Query: 181 acccccacagaagtgccaagacataaacacaaacacacacacacacacagttgaaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccccacagaagtgccaagacataaacacaaacacacacacacacacagttgaaaacaa 440

                                                                       
Query: 241 aggatgctaactagtgcttcaggtattttgttagagggacagagtagaagataggactaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggatgctaactagtgcttcaggtattttgttagagggacagagtagaagataggactaa 500

                                          
Query: 301 tctgaggaagtggttgagtgtggcttgccta 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 tctgaggaagtggttgagtgtggcttgccta 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)