BAC Information

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BAC

Clone NameMSMg01-476A07
Chromosome1 (Build37)
Map Location 109,828,547 - 109,829,107
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640, EG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476A07.T7 (MSMg01no476_a07.b1)MSMg01-476A07.TJ (MSMg01no476_a07.g1)
ACCAG557708AG557709
length756749
length of high quality
(start - end)
626 (42 - 667)575 (77 - 651)
definitionCHROMAT_FILE: MSMg01no476_a07.b1 PHD_FILE: MSMg01no476_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:59 2005CHROMAT_FILE: MSMg01no476_a07.g1 PHD_FILE: MSMg01no476_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGANATTCTCGGGCAAATGGATGTATCTGGAGGAAATCTTGACTGAGG
TAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGGTAAGTGGA
TATTAGCCCAGAAACTTAGAATACCCATATACAACTTCCAAAATACAAGA
AAATCAAGAAGGAAGACCAAAGCGTGGATACTCCATTCCTCCCTAGAATA
TGGAATAAAATATCCATGGAAGGAGTTGCAGAGACAAAGTTTGGAGCTAA
GATGAAAGTATGGACCATCCAGAGACTTCCACACCCAGGGGTCCATCCCA
TAATCAGCCACCAAACACAGCCACTATTGCATACGCCAGCAAGATTTTGC
TGAAGGGAGCCTGATAAAGCTGTCTCTTGTGAGGCTTTGCCAGTGTCTGG
CAAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACACAGGGG
CCCCAATTGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCA
ACTCTATAGGTGGAACAACAATCATAAATTCCTTCCCCACCCTTTTGTGA
TGTGAGCCTTGTTAAAACTATCTTCTCCTTTTCCTTCCTAGGATGTCTTT
GTCTAGAACCCTGAAAGCGCCTCTTAAAAAGGTAACCATGGAGGAAGGTA
TAACACTATCTTTCAGTTTTGTGGAATGTAGGAGCTGACCTTGTTCAGAA
TTGAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGATTAGCCAGTGTTCATGTC
TAGCAGGTTTTCTCCCCCGGAGTTTGTCTGACCTGCATGGCCTCTGGGGT
TTTGGATGTACCCTTGCCTCTGATGGAGTCCTTAGTACCATCATGGCCTG
GGTTCCCTGGTGCTGGTGGACCTCCAGGAAAGCAGGCCTGTTTGTGGGCT
ATAGAAAGGAGTACAGGGCATGGGATGCAGTTTAAGTCTGATGGGTGTGT
TTTGGGCAAATATGATGAGCATTTTTTTTGGACAGCACATTACCTGGTGT
CCCTGGTAACTGCAGATCTGCAGAAATGCAGGCAGAGTTGTGTGGTAGAA
AACGGAGCACAAAGTATGGGATGTAGTTACAGCTGTTGGATCAGTTTTCA
GGCAAGTTGGCAAGCAGGAGATTGGAGGGGAAAGGGACTTACCTAGTGTC
GTTGGGTCTGTCTGGTCTTCAGGAGATCCTGCAGAGTTGTGGCTTGGAAA
AATCCCTCCGTGCTCTTAGTGCATAATATGGGGAGCAAGAAGCACTATAA
GATATACCAGTCATCCTCACTGAAGACCACACATTGTGTATGGATAGACA
GTAGTCCATTAAGTACTAGTTGTGCATTAACTTTGTCATGTTGCATGGTT
CCAAATTCTGTGCTAGAACACAAGTCTATAGAATCTGTTTGCAAGGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_a07.g1 MSMg01no476_a07.g1 CHROMAT_FILE:
MSMg01no476_a07.g1 PHD_FILE: MSMg01no476_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:59 2005
         (575 letters)



>mm_chr1_109828347_109829321
          Length = 975

 Score =  975 bits (504), Expect = 0.0
 Identities = 547/566 (96%), Gaps = 10/566 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgattagccagtgttcatgtctagcaggttttctcccccggagtttgtctgacctgc 60
           ||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||
Sbjct: 761 tggtgattagccagtgttcatatccagcaggttgtatcccccggagtttgtctgacctgc 702

                                                                       
Query: 61  atggcctctggggttttggatgtacccttgcctctgatggagtccttagtaccatcatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 atggcctctggggttttggatgtacccttgcctctgatggagtccttagtaccatcatgg 642

                                                                       
Query: 121 cctgggttccctggtgctggtggacctccaggaaagcaggcctgtttgtgggctatagaa 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cctgggttccctggtactggtggacctccaggaaagcaggcctgtttgtgggctatagaa 582

                                                                       
Query: 181 aggagtacagggcatgggatgcagtttaagtctgatgggtgtgttttgggcaaatatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aggagtacagggcatgggatgcagtttaagtctgatgggtgtgttttgggcaaatatgat 522

                                                                       
Query: 241 gagc-a----ttttttttggacagcacattacctggtgtccctggtaactgcagatctgc 295
           |||| |         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gagcgaggcc-----tttggacagcacattacctggtgtccctggtaactgcagatctgc 467

                                                                       
Query: 296 agaaatgcaggcagagttgtgtggtagaaaacggagcacaaagtatgggatgtagttaca 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agaaatgcaggcagagttgtgtggtagaaaacggagcacaaagtatgggatgtagttaca 407

                                                                       
Query: 356 gctgttggatcagttttcaggcaagttggcaagcaggagattggaggggaaagggactta 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gctgttggatcagttttcaggcaagttggcaagcaggagattggaggggaaagggactta 347

                                                                       
Query: 416 cctagtgtcgttgggtctgtctggtcttcaggagatcctgcagagttgtggcttggaaaa 475
           ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||
Sbjct: 346 cctagtgtcgttgggtctgcctggtcttcaggagatccagcagagttgtggcgtggaaaa 287

                                                                       
Query: 476 atccctccgtgctcttagtgcataatatggggagcaagaagcactataagatataccagt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atccctccgtgctcttagtgcataatatggggagcaagaagcactataagatataccagt 227

                                     
Query: 536 catcctcactgaagaccacacattgt 561
            |||||||||||||||||||||||||
Sbjct: 226 tatcctcactgaagaccacacattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)