BAC Information

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BAC

Clone NameMSMg01-476B02
Chromosome1 (Build37)
Map Location 175,006,857 - 175,007,229
singlet/doubletsinglet
Overlap genenone
Upstream geneNcstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16
Downstream geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476B02.T7 (MSMg01no476_b02.b1)MSMg01-476B02.TJ (MSMg01no476_b02.g1)
ACCAG557746AG557747
length942731
length of high quality
(start - end)
---375 (78 - 452)
definitionCHROMAT_FILE: MSMg01no476_b02.b1 PHD_FILE: MSMg01no476_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:03 2005CHROMAT_FILE: MSMg01no476_b02.g1 PHD_FILE: MSMg01no476_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCCCCTNNNNNNNTTTTNNNNNNNNNTTCTATAATTTGCGGNCCGCT
AATACGAACTCCTATATTTCAGAGGNATCCGCGGNAATTCTGTTCGCATC
CCCTTTATAATATATTCATCATGTAAAAGTCANNGACTATGTGCCCTGTG
AAAAAGCCCGNAAAATTTTCATTCCTCCTCACACTGTAATACGCTCACCT
CTCAGTGAGGAGGGGGTGGGGTTCATTNNNCCCCCCCCCTAAAAACCCCT
TTAAAAAAATTCCCCCCCCGGGTAATGNAAAAAAAAGTCCCCCNAAACCA
TTTGTGCGGCCGCTGCTATTTNNNAAAACCATATATTCTTTTCTCTTCNN
NCCCCCCCCNNNNNTTCCCCCCCCCCCCCCCAAAAAACCCCCCTCTTTTA
AAAAAAACACCTCCATAAAAAAAACCCCCCCTTCCCCAAAAAATCTNTNT
CNCCCNCCTTTTTATTTCTTCCCCCCCCCCNNNNNNTTTTTTTTTTTTTT
TTNNNTCCTCTCTCTCTTCTCTCCCCCCCCCTCTTACTCTTTTTCTTTTT
TTTTTCTTCTTCCCCCCCCCNCTTCTTNTCCCCCCCCCCCCCTCCCCCCT
CCTCTTTTTTTTTTTTTTTTTTTTTTTTTNNNNTNNNTNNNNNNNTNNNN
NNNTCNTTCCCCCCTCTCTTCGCTTTTTTTTTTNCNTCTTTCCCTCTCTT
TTTTCCCTTTTTTNCTCTCTCCTTCCCCCTCCCCTATCTCTTCTCCTCCC
TCTCCTTCTTCCTTCCCCCCTTTCTCCTNTCTCCTCCCTCTCTTCTCCCC
TTTTTTTTTCCCCCNCTTCCCTCTTTCCCCCCTCCCTCTCCTCTCCCCTC
TCTCTTTCCTCCCCTTTCTTTTTTNNANNNNCCCCNNCCCTCTNTTTCAT
CCCCTCCCCCTCTCACTCCCCCCCCCCACACCCGACAGCACG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGGTAGATAAAGACAACCACAA
AATGGAAACCATGGGTACCAAAGCCCTTCTTCTAACCTTCTGCTGAAGCA
ATCCAAAGGATGGTGGGGATGATGATAGGAGAAGATCATCATGTGAGTGC
ATAGAAGAGGTCTATCATATGAGCACATAGAGAGGACCATCATGTGAGCC
CATAGGAGAGGACCATCAGTAGAATACTGAAGAGAGTGGCCTAACCTGAT
TGCCCCCCCTTCTCTCTCTCTCTTTCCTGCCTTGCCATGTGAGTTGAATT
ATTTTCTACTCAGATATTTGCTATAATTATGAAAAGCTAACTAACATAAT
TCGCTGCTGTTGTTCCTCAAAGAGGAAATAGAATTTAAAGAGAAGCAGAG
GACCTGTGGTCAAAGGAATGAACTATGCAGTCAATACCCAGAATAGATGC
TATTCCTCTAGATCCATTTCTGAGCCATAGACTGTTATTTAGCCTCTCTG
TTTCTTAATCCCCTTCTCCAAAAGGGCTTTAATTTTAGCATTCATTTACA
GGTACCACCCTTTTTATTATTAAGCGGTCCCTCCTTTTTTTATAAACAAT
GCCTGGGGCTTCTATTTAAAGGGGTCACCACCATTGTTCCAAGGGCGCAC
ATTTTCTCGGCCGGTTTCTCTCCCTTCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_b02.g1 MSMg01no476_b02.g1 CHROMAT_FILE:
MSMg01no476_b02.g1 PHD_FILE: MSMg01no476_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:03 2005
         (375 letters)



>mm_chr1_175006657_175007429
          Length = 773

 Score =  714 bits (369), Expect = 0.0
 Identities = 373/375 (99%), Gaps = 2/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtagataaagacaaccacaaaatggaaaccatgggtaccaaagcccttcttctaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atggtagataaagacaaccacaaaatggaaaccatgggtaccaaagcccttcttctaacc 514

                                                                       
Query: 61  ttctgctgaagcaatccaaaggatggtggggatgatgataggagaagatcatcatgtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttctgctgaagcaatccaaaggatggtggggatgatgataggagaagatcatcatgtgag 454

                                                                       
Query: 121 tgcatagaagaggtctatcatatgagcacatagagaggaccatcatgtgagcccatagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgcatagaagaggtctatcatatgagcacatagagaggaccatcatgtgagcccatagga 394

                                                                       
Query: 181 gaggaccatcagtagaatactgaagagagtggcctaacctgattgcccccccttctctct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 393 gaggaccatcagtagaatactgaagagagtggcctaacctgattgccccccct--tctct 336

                                                                       
Query: 241 ctctctttcctgccttgccatgtgagttgaattattttctactcagatatttgctataat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctctctttcctgccttgccatgtgagttgaattattttctactcagatatttgctataat 276

                                                                       
Query: 301 tatgaaaagctaactaacataattcgctgctgttgttcctcaaagaggaaatagaattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tatgaaaagctaactaacataattcgctgctgttgttcctcaaagaggaaatagaattta 216

                          
Query: 361 aagagaagcagagga 375
           |||||||||||||||
Sbjct: 215 aagagaagcagagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 773
Length adjustment: 9
Effective length of query: 366
Effective length of database: 764
Effective search space:   279624
Effective search space used:   279624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)