BAC Information

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BAC

Clone NameMSMg01-476E11
Chromosome1 (Build37)
Map Location 162,835,114 - 163,014,581
singlet/doubletdoublet
Overlap geneRc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750
Downstream geneKlhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476E11.T7 (MSMg01no476_e11.b1)MSMg01-476E11.TJ (MSMg01no476_e11.g1)
ACCAG557908AG557909
length806771
length of high quality
(start - end)
245 (69 - 313)241 (74 - 314)
definitionCHROMAT_FILE: MSMg01no476_e11.b1 PHD_FILE: MSMg01no476_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:20 2005CHROMAT_FILE: MSMg01no476_e11.g1 PHD_FILE: MSMg01no476_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,014,337 - 163,014,581)(162,835,114 - 162,835,354)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACAGGATCCGCGGAAT
TCCCACCTCTCTACAGAAAAGGACAAATACACAGGAAATTTTAGAAACAG
AAAAAATAGAATTAATCTCTTTTAAGAGTCTTAACAATGACAAAATAATA
AGCATTCACTGGATTATATGTATAGGGATATGTATTTAATTATAACGTAA
GGGGACTAGAGAGATGGCTTAGCGGCTAAGAGCACTGACTACTCTTCCAG
AGGAACCAGGTTCAATTCCTAGTGCCCAAATGACATCTCATAGCCGAACT
CTAGGCTCACTGATTCTATTTGTTCCCTCTTCTGGTCTCCAAGGACATCA
GACATAGTATAGGCACGGCGCATGGACATATCCGCCTTCCAATCACCCTC
ACACTTAACCAAATATTTACATAATGTATGCCTGAACAGTCCATTCATTT
GCTTCCTTACAGAACATGAACCCTATGACGCTGTGTCTTTCCTTTCCCCA
CGCTCGCATAACCGTTATTTGTTGGCCCTTCCGATCTTTTATCTCGTTTC
TGTTCCTTCTTTTTTATCCCTTCGCCCTCTTTCACTTTATTGTCTATTTT
TCCTTATTCACTTCCCTCTCCACTTTCGCTTTTTTTTTGCCTCCTTTTCC
CTTTCCTTCCTAACTCATTTCCTTTTTTTTTTTCCCTTCCTCATTCGTCC
CCCTTTTTTACCCGTGCCTCCCCTTTCCTTTCTATATTTTATTTTAACCC
GGCGCTAACCACTTTTTTTATCCGCCCCCCTTCCTTTATCTCTCCCCACC
CCTCTN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGACACACGCAATTCCAGGACAGCCAGAGCTACACAGAG
AAACCAAGAAAATAAAAAAATTAAAAATGAGGTGGGAGACGAGCCCGTGA
ACGTGCTCCAGGCCACCCTGGTCTCAAAGCAAGAGCCTGTCTCAAGAACC
AAAGCCTGGCCAGGTATGGCTAGGTGGCCATACCTATAATCTGAGCTCTC
ATTTAGCAGAGGTTCAGAACTTCCAGGTCAGTCCAGGCTCCAGGATTTTC
TGTTCCGGGAATAATATTAATCCTTTCAAACCAAAACAACAACAAACAAA
CAATCAAACATCCACGGGGAAAAAAAAGAAACCAAAACAAAGCCCAAACA
AGCCCAACAGCCACCCAGTAATTGTTTCTTGTGAGATGTGGAAGTAATTT
GTTTGTTTGTTCTAAATCCATGCTGGTGAGTTTATAGTGAAGAAAGGATC
GTTTGGTCATGGTTCTTACGCCTTTATATTCTTGTCTTGGACCACATACA
TATACGCCAACTTTTGCGTTCTCATACCCCCGTCTGTTCTAAATAATTTA
TCCTACCTATACCCTTCCGCCCCTCCCTTCTTAAACCCCCCTTCTTTCTT
CATATTTTTTTTTTTTTTTCCTCCCCACATACTCCTCCCCCCTTTTCTCC
TCCTCCCCCCTTATCTCTCTTTTTTTTCTCTCTCCCCCTCCTTCACCCTC
TCTTCTCCGTATTCCCCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_e11.b1 MSMg01no476_e11.b1 CHROMAT_FILE:
MSMg01no476_e11.b1 PHD_FILE: MSMg01no476_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:20 2005
         (245 letters)



>mm_chr1_163014249_163014893
          Length = 645

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggacaaatacacaggaaattttagaaacagaaaaaatagaattaatctcttttaagag 60
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 333 aaggacaaatacacagaaaattttagaaacagaaaaagtagaattaatctcttttaagag 274

                                                                       
Query: 61  tcttaacaatgacaaaataataagcattcactggattatatgtatagggatatgtattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcttaacaatgacaaaataataagcattcactggattatatgtatagggatatgtattta 214

                                                                       
Query: 121 attataacgtaaggggactagagagatggcttagcggctaagagcactgactactcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 attataacgtaaggggactagagagatggcttagcggctaagagcactgactactcttcc 154

                                                                       
Query: 181 agaggaaccaggttcaattcctagtgcccaaatgacatctcatagccgaactctaggctc 240
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct: 153 agaggaaccaggttcaattcctagtggccaaatgacatctcatagccaaactctaggttc 94

                
Query: 241 actga 245
           |||||
Sbjct: 93  actga 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_e11.g1 MSMg01no476_e11.g1 CHROMAT_FILE:
MSMg01no476_e11.g1 PHD_FILE: MSMg01no476_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:20 2005
         (241 letters)



>mm_chr1_162834914_162835554
          Length = 641

 Score =  435 bits (225), Expect = e-126
 Identities = 237/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccaggacagccagagctacacagagaaaccaagaaaataaaaaaattaaaaatgaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccaggacagccagagctacacagagaaaccaagaaaataaaaaaattaaaaatgaggt 260

                                                                       
Query: 61  gggagacgagcccgtgaacgtgctccaggccaccctggtctcaaagcaagagcctgtctc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagagacgagcccgtgaacgtgctccaggccaccctggtctcaaagcaagagcctgtctc 320

                                                                       
Query: 121 aagaaccaaagcctggccaggtatggctaggtggccatacctataatctgagctctcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 aagaaccaaagcctggccaggtatggctaggtggccatacctataatctgagctctcagg 380

                                                                       
Query: 181 tagcagaggttcagaacttccaggtcagtccaggctccaggattttctgttccgggaata 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcagaggttcagaacttccaggtcagtccaggctccaggattttctgttccgggaata 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)