BAC Information

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BAC

Clone NameMSMg01-476H13
Chromosome1 (Build37)
Map Location 76,069,409 - 76,069,923
singlet/doubletsinglet
Overlap genenone
Upstream geneNhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476H13.T7 (MSMg01no476_h13.b1)MSMg01-476H13.TJ (MSMg01no476_h13.g1)
ACCAG558056AG558057
length759766
length of high quality
(start - end)
515 (74 - 588)296 (326 - 621)
definitionCHROMAT_FILE: MSMg01no476_h13.b1 PHD_FILE: MSMg01no476_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:35 2005CHROMAT_FILE: MSMg01no476_h13.g1 PHD_FILE: MSMg01no476_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGACGATCCGCGGA
ATTCAGGCCTTGCCAAAGACATCAATAGACAGGATAGATAAGCAAGATTT
AGGACACATCCAGATGGCAGCAGGGCTATGTTAGATCTCAGTTGTTGTAC
AACAAATCTTCTGCAAACAGAAAGGCTAAAATAATAACAACATATTTGTT
TACAGAGTCTGAGGGTCATAAGTCAAAGAGTAGCTAAGCTGGATGTGTGT
AGTTTAGACTCTTGTCATGAGAGCGAGTAAAACTATTGAGAAGGTCTGTG
CTAAGATGGCTTCCTGTTGCTGTAGGCTACTCTTGTAGGAGTCCTCAGTT
GTTCTTCACATGCTGGCTTCTAAGAACAAGGAGAAAGCCAACCTACTTTA
TATGACAGCAGTCATTTCTGTGCACGCTATTTGCTGAAAGAAGAGTCCCC
AAGTAGAGTTTATATTTGCAAGAAGAGCTGTTTTTAAAATCACACAAAGG
TCAAGGGAATATAATACAGCAGAGGGACGAGAAACAAAGAGCTGGTGAAG
GGTAGATACTGTTGTTGGTAAGCTGACAAGGAGGTCAGACTGGAGTGGAA
GTTTGGCTGTGCTTGGGGTGCAGGCTTAGTCAGGAATGTAGCCAGGGTTC
ATGTTATTTTTTGTTTCCAAGCCTTTAGAACCATTGTTGCCATTTCGTCT
TTCTCTTCGCATGAATGTACGTTTACGTAACTTTTTCCCCGCCGTCCCTT
TACGCTTCC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGATTTCTAACTGCCAGCTACAT
GGCAAGTAGCATATAAGCAACAACGACTGTCATTACAACTATTCCTATTA
TTTAATAGTCAGTCCACATATATATCATGCACTTGCTTTTCAAATTACTA
TGAAGCAAGAATAAAATGGAAAGACCAGTTTCTTGATGGAATGCAGAGAA
TGTGTACAATTGGCTGAAAACTTACAATATTTTAATATATATATGAGCTA
TTAGTTATATTTAAAATCCTANTAGGAACAACAGATATAATGTGTGTGCA
TTTGTGCATATGTGGACACCGACTCTTTAAAAGAGGACTGCACAAATAGA
CAGAACTAGAAAATATCATCCCAAGTGAGGTAACTCAGACCCAAAAGGAC
ATACTGGTATGTACTCACTAATAAGTGGATGTTAGCCAAAACAAACAAAC
AAACAAACAAAAGTACAGAATACCCAAGACACAATCCACAGACCTCAAAA
AGATCAACAAGCTGAAGTGCCCAAGTGAGGATACCTCAGTCCCACTTGGG
AGGGAGAAGAAAGCAATCACCAGTGTGGAGGGAGGCAGGCCCCCCGACTT
TTTTTTTTTTCTTTCTTTTTTTCCCCCCTCTCCCACCTTTCCTTTTCCCC
TTTTCTTTTCTTTTTTCTTTTCCCTCTTTTTTTTTCCCCTCCCCCCCCCC
TCTTTCTTATTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_h13.b1 MSMg01no476_h13.b1 CHROMAT_FILE:
MSMg01no476_h13.b1 PHD_FILE: MSMg01no476_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:35 2005
         (515 letters)



>mm_chr1_76069209_76070123
          Length = 915

 Score =  949 bits (491), Expect = 0.0
 Identities = 509/515 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagacaggatagataagcaagatttaggacacatccagatggcagcagggctatgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagacaggatagataagcaagatttaggacacatccagatggcagcagggctatgtta 260

                                                                       
Query: 61  gatctcagttgttgtacaacaaatcttctgcaaacagaaaggctaaaataataacaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctcagttgttgtacaacaaatcttctgcaaacagaaaggctaaaataataacaacat 320

                                                                       
Query: 121 atttgtttacagagtctgagggtcataagtcaaagagtagctaagctggatgtgtgtagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 atttgtttacagagtctgagggtcataagtcaaagagtagctaagctggatgtgtgcagt 380

                                                                       
Query: 181 ttagactcttgtcatgagagcgagtaaaactattgagaaggtctgtgctaagatggcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagactcttgtcatgagagcgagtaaaactattgagaaggtctgtgctaagatggcttc 440

                                                                       
Query: 241 ctgttgctgtaggctactcttgtaggagtcctcagttgttcttcacatgctggcttctaa 300
           |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggggctggaggctactcttgtaggagtcctcagttgttcttcacatgctggcttctaa 500

                                                                       
Query: 301 gaacaaggagaaagccaacctactttatatgacagcagtcatttctgtgcacgctatttg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gaacaaggagaaagccaacctactttatatgacagcagtcatttctgtgcactctatttg 560

                                                                       
Query: 361 ctgaaagaagagtccccaagtagagtttatatttgcaagaagagctgtttttaaaatcac 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaaagaagagtcctcaagtagagtttatatttgcaagaagagctgtttttaaaatcac 620

                                                                       
Query: 421 acaaaggtcaagggaatataatacagcagagggacgagaaacaaagagctggtgaagggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaaggtcaagggaatataatacagcagagggacgagaaacaaagagctggtgaagggt 680

                                              
Query: 481 agatactgttgttggtaagctgacaaggaggtcag 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 agatactgttgttggtaagctgacaaggaggtcag 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)