BAC Information

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BAC

Clone NameMSMg01-476K19
Chromosome1 (Build37)
Map Location 182,007,895 - 182,178,016
singlet/doubletdoublet
Overlap geneCdc42bpa, Cabc1, Psen2
Upstream geneSmyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190
Downstream geneEG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476K19.T7 (MSMg01no476_k19.b1)MSMg01-476K19.TJ (MSMg01no476_k19.g1)
ACCAG558209AG558210
length775770
length of high quality
(start - end)
487 (64 - 550)245 (68 - 312)
definitionCHROMAT_FILE: MSMg01no476_k19.b1 PHD_FILE: MSMg01no476_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:51 2005CHROMAT_FILE: MSMg01no476_k19.g1 PHD_FILE: MSMg01no476_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(182,007,895 - 182,008,381)(182,177,772 - 182,178,016)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CCAGAGTTACATTTTCTAAGATAGGGTGCTACTCATGGGATAGCTTTAAT
ATGCATGCTGCACTATTTTCAGGGGACTCTTGTTGTTTTGAGGATAAAGT
AATAATTTCTCAGTGTGTGTTGGAAACCCTCCCTTGCCATGCATGTGCTT
GTCTCTTCAGCTTCATTTCTAGTTCCTGCTCCCTTTGTTATGCCAGTCCT
ACCCACATCAGATGGTTTCTAGATCCCATCAGTACTTATCCTTCATCCAC
GTAATCCTGACTTCTATTTCTTAGCTCTGCTTTCTCTTGTCTACCTGTCA
GCCATCTTTCCATCTTCTGCCTGTCTGTCTGCATATGGTTGTTCATTTGC
TTGAGACATATTTTGTAACCCCCTACTCATCCATAACATGTTTCATTATT
AACATAATTATGGCTGGCATTGTCTTTCCTCACCTCACCAAAAGAGCACA
AGCTCTTTGAAAACAGGAGCTTTAAATTCATTTACGTTTTTCATTTTATT
CACTACCATGCCCCAAGCCCCTATAGGGTTGTACTTGCTTCATTAAAAAC
CCTAATCACCATTTGCTTACGATTTATTGATAAATCCTTTCTTCATAACC
CACTTCTTATCATTTCCGTCCCCCACGTGTTGCTATTTCTATTTTCAAGT
ACACCTTTATTTTTTATTTTTCGTCACAAAGCGCCATCCTATTTCGGTAA
ATTTTCCTATTGCCACCCCCTTTTT
ACAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCAGAAATTCACTGTTGCTGGAAGGGATACTGAAGAGACCTT
GGGTCTAGTGGGTGTGTGTTTAAGATATGACAGACAGCCAGTTCTCAAAG
AGGAAGGGGACCTTACAGTCTTGCAGACCCCTGCTTGGCAAGAATTCCCC
CATATGTCAGGGCAAGGTGACCTTTGAAGCTATGTCCCCTTAAGCTGATT
TCTCTTGTAGAGACTCTTGGTTCCAAAGCTCTAGGGCACAGAACACCTTC
TGAGCACAGGGCTTAGTCATTTTCCAGAATGCCAAGTATGAGGGCAGTGG
ACCCATTATCTAGGCCATGCTCTGCTGTGTGTGGCCTCCATAAGAGGACA
TTTCTCTTCTGCCCTCCTAGGAGATACCTAGGCTGAATTACACTCCCTTC
CCCTTGGCCAGATGCTCAGACCCTTTCCCGGGATGGCCTACCCTAGTAGG
TCCCCTGATCTCACCATCATATTGACACTACTTGCTGTTGTGTACTCCTC
CTGTTCATACACTCTGATACTTACTTCTTTCCAGAATGTTCCGACTCTTG
CTGCCACCCTTCTTCTATCCTCCTTGCCCATGTCTTTGCCCCCTTTTTTC
TTTTTTTTTTTTCGTCTACTTCCTGCCCGTCCCTCCTCTCCCCTTTTCTC
GTCCTTGCCCCTTTTTTTTTTTTTTTCCTCCCCCTCCTTTTGTCCGGTCA
TTCCCCGTTTTGCCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_k19.b1 MSMg01no476_k19.b1 CHROMAT_FILE:
MSMg01no476_k19.b1 PHD_FILE: MSMg01no476_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:51 2005
         (487 letters)



>mm_chr1_182007695_182008581
          Length = 887

 Score =  888 bits (459), Expect = 0.0
 Identities = 480/487 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctaagatagggtgctactcatgggatagctttaatatgcatgctgcactattttcagg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctaagatagggtgctactcatggaatagctttaatatgcatgctgcactattttcagg 260

                                                                       
Query: 61  ggactcttgttgttttgaggataaagtaataatttctcagtgtgtgttggaaaccctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactcttgttgttttgaggataaagtaataatttctcagtgtgtgttggaaaccctccc 320

                                                                       
Query: 121 ttgccatgcatgtgcttgtctcttcagcttcatttctagttcctgctccctttgttatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgccatgcatgtgcttgtctcttcagcttcatttctagttcctgctccctttgttatgc 380

                                                                       
Query: 181 cagtcctacccacatcagatggtttctagatcccatcagtacttatccttcatccacgta 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 cagtcctacccacatcagatggtttctagatcccatcagtgcttatccttcatccacgta 440

                                                                       
Query: 241 atcctgacttctatttcttagctctgctttctcttgtctacctgtcagccatctttccat 300
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctgacttccatttcatagctctgctttctcttgtctacctgtcagccatctttccat 500

                                                                       
Query: 301 cttctgcctgtctgtctgcatatggttgttcatttgcttgagacatattttgtaaccccc 360
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 cttctgcctgtctgtctgcgtatggttgttcatttgtttgagacatattttgtaaccccc 560

                                                                       
Query: 361 tactcatccataacatgtttcattattaacataattatggctggcattgtctttcctcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactcatccataacatgtttcattattaacataattatggctggcattgtctttcctcac 620

                                                                       
Query: 421 ctcaccaaaagagcacaagctctttgaaaacaggagctttaaattcatttacgtttttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ctcaccaaaagagcacaagctctttgaaaacaggagctttaaattcatttatgtttttca 680

                  
Query: 481 ttttatt 487
           |||||||
Sbjct: 681 ttttatt 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no476_k19.g1 MSMg01no476_k19.g1 CHROMAT_FILE:
MSMg01no476_k19.g1 PHD_FILE: MSMg01no476_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:51 2005
         (245 letters)



>mm_chr1_182177572_182178216
          Length = 645

 Score =  412 bits (213), Expect = e-119
 Identities = 237/245 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgttgctggaagggatactgaagagaccttgggtctagtgggtgtgtgtttaagata 60
           |||||||||  |||| ||||| ||||||| || |||||||||||||||||||||||||||
Sbjct: 445 cactgttgccagaagagatacggaagagatctcgggtctagtgggtgtgtgtttaagata 386

                                                                       
Query: 61  tgacagacagccagttctcaaagaggaaggggaccttacagtcttgcagacccctgcttg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 tgacagacagccagttctcaaagaggaaggggaccttatagtcttgcagacccctgcttg 326

                                                                       
Query: 121 gcaagaattcccccatatgtcagggcaaggtgacctttgaagctatgtccccttaagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaagaattcccccatatgtcagggcaaggtgacctttgaagctatgtccccttaagctg 266

                                                                       
Query: 181 atttctcttgtagagactcttggttccaaagctctagggcacagaacaccttctgagcac 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agttctcttgtagagactcttggttccaaagctctagggcacagaacaccttctgagcac 206

                
Query: 241 agggc 245
           |||||
Sbjct: 205 agggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)