BAC Information

Click to search

BAC

Clone NameMSMg01-477E13
Chromosome1 (Build37)
Map Location 68,450,783 - 68,451,328
singlet/doubletsinglet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842, EG241084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477E13.T7 (MSMg01no477_e13.b1)MSMg01-477E13.TJ (MSMg01no477_e13.g1)
ACCAG558671AG558672
length754748
length of high quality
(start - end)
549 (46 - 594)418 (328 - 745)
definitionCHROMAT_FILE: MSMg01no477_e13.b1 PHD_FILE: MSMg01no477_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:41 2005CHROMAT_FILE: MSMg01no477_e13.g1 PHD_FILE: MSMg01no477_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAATAATTGGCGCCGCTATACGACTCACTATTTCCAGAGGATCCGCGG
AATTCTTTCATTAACATTTTAATAATTTTTGTCAGTGTTTTCAATGTTTG
TATTGCAGAATTTTTTTTCTGAATCATCCAAGTCCCCAAACACTTACACT
TAATAGTATCTTGTATAGAATTAAAATTCTTGATGTATTTGAGAGTCCAA
TAATCACTTTACAAGATTAAATCATCTTTCTTTTCTTGCTTTATCTTTTA
TTTGCAAGTTTTATCTTGCCAGAAATAAGCATACACATTGATGTGGTTAT
TACTGTCATCTATAAAAAAAATCATCCTTTCTAAAAATTCTAAAGAAGGG
AAGACATCACACATTGTGAGAAGAGTTATTAAAACGATACAAACTAATAT
AGTAGGTGAGATATTAGGAAGTGACCTTGCAGTAAGTCCCAGGCTTATTG
TATTAAAGCTTGTAAATAAAATGGACAAATCATTTCTGGTACTAGTGCAA
CTCTTTCCCTTTATTGGAAATGAAAACAATGAACTCTGCTGTTTTTTCTT
TTTTTTCTACTGAAGCAATTACATTTTCTTGAAACTTGGAGCAGTTATTT
AAGAGGATTTTTGTCTGCAATGAGGGGTTTCTGCTAGTTAGAACATGAAA
ACGTTTGAGCTTTATGTAAGGAAGTATTTGATTTCAATTATCAAGAACCC
ATTAAATCTCCCATGTTTTGCTTAACCACTTTCCAATTGTGATCATGCTT
ATTG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGCTCCAGAGGAATTCTCAGCCAAGGAATACCCAAT
GGCTGAGAAGCACGTAAAAAAATGTTCAACATCCTTAGTCATCAGGGACA
TGCAAACCAAAACAACCTTGAGATTCCACCTTACACAAGTCAGAATGACT
AAGATCAAAAACTCAGATGACAGCAGAATGTGGAGAAAGAGGAACACTCC
TCCTCTGCTGGTGGGATTTCAATTTGGAACAACCACTCTGGAAATCAATT
TAGCGGTTCCTCAGAAAATTGGTCATAGTACAACCTGCAGACTCACTAAT
ACCTCTCCTGAACATATACTCAGAAGATACTCCAACATGTAATAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAACCAGGAGTTGG
AAAGAACCCAGATGTCTCTCAACAGAAGAATGGATACAGAAAATGTGGTA
CATTTACACAATGGAATATTACTCTTCTACAAAAACAAACAAACAAAAAA
CAACAACAACAACAAAAAACCAATGAATCTTTAAAATTCTTAGGCAAATG
GAGGGAACTAGAAAATATCATCCTGAGTGAGGTAATCCAATCACAAAGGA
ACACACGTGATATGCACTCACTGATAATGGATATTAGTCCAGAAGCTCAG
AATAGCCAACATACAATTCACAAACCACATGAAACTCAAGAAGAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_e13.b1 MSMg01no477_e13.b1 CHROMAT_FILE:
MSMg01no477_e13.b1 PHD_FILE: MSMg01no477_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:41 2005
         (549 letters)



>mm_chr1_68450579_68451528
          Length = 950

 Score = 1040 bits (538), Expect = 0.0
 Identities = 544/546 (99%), Gaps = 1/546 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcatta-acattttaataatttttgtcagtgttttcaatgtttgtattgcag 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gaattctttcattacatattttaataatttttgtcagtgttttcaatgtttgtattgcag 691

                                                                       
Query: 64  aattttttttctgaatcatccaagtccccaaacacttacacttaatagtatcttgtatag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aattttttttctgaatcatccaagtccccaaacacttacacttaatagtatcttgtatag 631

                                                                       
Query: 124 aattaaaattcttgatgtatttgagagtccaataatcactttacaagattaaatcatctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aattaaaattcttgatgtatttgagagtccaataatcactttacaagattaaatcatctt 571

                                                                       
Query: 184 tcttttcttgctttatcttttatttgcaagttttatcttgccagaaataagcatacacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tcttttcttgctttatcttttatttgcaagttttatcttgccagaaataagcatacacat 511

                                                                       
Query: 244 tgatgtggttattactgtcatctataaaaaaaatcatcctttctaaaaattctaaagaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgatgtggttattactgtcatctataaaaaaaatcatcctttctaaaaattctaaagaag 451

                                                                       
Query: 304 ggaagacatcacacattgtgagaagagttattaaaacgatacaaactaatatagtaggtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggaagacatcacacattgtgagaagagttattaaaacgatacaaactaatatagtaggtg 391

                                                                       
Query: 364 agatattaggaagtgaccttgcagtaagtcccaggcttattgtattaaagcttgtaaata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agatattaggaagtgaccttgcagtaagtcccaggcttattgtattaaagcttgtaaata 331

                                                                       
Query: 424 aaatggacaaatcatttctggtactagtgcaactctttccctttattggaaatgaaaaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaatggacaaatcatttctggtactagtgcaactctttccctttattggaaatgaaaaca 271

                                                                       
Query: 484 atgaactctgctgttttttcttttttttctactgaagcaattacattttcttgaaacttg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atgaactctgctgttttttcttttttttctactgaagcaattacattttcttgaaacttg 211

                 
Query: 544 gagcag 549
           ||||||
Sbjct: 210 gagcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space:   506660
Effective search space used:   506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)