BAC Information

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BAC

Clone NameMSMg01-477E18
Chromosome1 (Build37)
Map Location 69,083,656 - 69,255,817
singlet/doubletdoublet
Overlap geneErbb4, LOC667842
Upstream genenone
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477E18.T7 (MSMg01no477_e18.b1)MSMg01-477E18.TJ (MSMg01no477_e18.g1)
ACCAG558681AG558682
length755792
length of high quality
(start - end)		709 (41 - 749)547 (75 - 621)
definitionCHROMAT_FILE: MSMg01no477_e18.b1 PHD_FILE: MSMg01no477_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:42 2005CHROMAT_FILE: MSMg01no477_e18.g1 PHD_FILE: MSMg01no477_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,083,656 - 69,084,360)(69,255,271 - 69,255,817)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCATCTGTCCTATTACTGTTTAGTGTAGAGACTAGGTTCTATGTGGTGG
TTTGCATGAACATGCATCACATAGATGTGTACAATTTCATGCTTAGTCCC
TAGTTGATGAGTTTTCTTTTCTTTTTTTTCTTTTAGATATTTTCTTCATT
TACATTTCAAATGCTATCCCCAAAGTCCCCCAACCCACCCACTCCTGCTT
CCTGGCCCTGGCATTCCCCTGTACTGGGGCATATAATCTTCACAAGACCA
AGGGCCTCTCCTCCCATGATGGTCTACTAGGCCATCCTCTGCTACATATG
CAACTAGAGACGCAAGCTCTGGGGGGTACCGGTTAGTTCATATTGTTGTT
CCACCTATAGGGTTGCAGACCACTTTGGTGCCTTGGGTACTTTCTCTAGC
TCCTTCATTGGAGACCCTGTGTTCCATCCAATAGCTGACTGTGAGTGTCC
ACTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAAGAGACAGCTGTCC
TGTCAGCAAAATATTGCTGTACTACCTTATCTTATGAGACATTAGTAGAT
TTTTCTAGGCAAAGCAAAAACTATCATTTAATAATAATTTAAAATATCCA
AGCAAGTTAATAATTCAGTATAACCATTTGAATATGTTTGGGTTCAACTG
TCAAATATCTTCGATATTCCTAATTTTTAAATAGCTGTGCTGTAGTTAAA
AATTG

CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTGTATCTTCTTTATCAAACATTT
ATTTTTTTCACTATGATAGTAAAATTCTGTTTTAAGCTGCTATTGCATTT
ATTATTTTTGGAAACATGAGGTTAATTTTAAATGTGAAAAATTGCAGAAT
TTTAATATTATTTTTTTCCCTGTTTTAACCATGATCTGCACAGATCTTCT
GCGTAGGAATGATACTTACTAGTCTTACAGGACAACATTAGTGATCTCTG
AGGAAGGACTTGAGCCTGATCACATTTGCAGATATCTTGGCAGTGTGACC
ATCTGATGTCATGAACGCACTGTCACCTTGCTGGTCCAACTGGTGCTAGG
ATGATTAGACCCATACCAGATATGTAGGGAGATCAGGAAAATGCTAGCTA
CTAGAAACTGCACGTAGAAGGAGTAACACCCGAGGCTTGAGGAACGTGAC
AAGCATGTATCAAATCAGGGCAAGGTAACAGGAAAATACTGTGGGGCAGT
GGAGGAGTGTGAGAGAAGGCTAAAGGAATAAATCCAACAATATAAATAAG
GAAAATGATGATGCATTCATACGCCAAAGAATTTTACTTTACCATTACTG
GGTAAGAGAACTTGAACACAGGAAGAGGGGGAAAACTACTATGTAAACCT
CANGGTACTTTGAACCAATANGAATGCCCCTATGTGTTGTGAGCATGATG
ATGATTTTGTGGGATCAGGNATATCTGATACAGTGCCCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_e18.b1 MSMg01no477_e18.b1 CHROMAT_FILE:
MSMg01no477_e18.b1 PHD_FILE: MSMg01no477_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:42 2005
         (709 letters)



>mm_chr1_69083452_69084560
          Length = 1109

 Score = 1363 bits (705), Expect = 0.0
 Identities = 705/705 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatctgtcctattactgtttagtgtagagactaggttctatgtggtggtttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatctgtcctattactgtttagtgtagagactaggttctatgtggtggtttg 264

                                                                       
Query: 65  catgaacatgcatcacatagatgtgtacaatttcatgcttagtccctagttgatgagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgaacatgcatcacatagatgtgtacaatttcatgcttagtccctagttgatgagttt 324

                                                                       
Query: 125 tcttttcttttttttcttttagatattttcttcatttacatttcaaatgctatccccaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttttcttttttttcttttagatattttcttcatttacatttcaaatgctatccccaaa 384

                                                                       
Query: 185 gtcccccaacccacccactcctgcttcctggccctggcattcccctgtactggggcatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcccccaacccacccactcctgcttcctggccctggcattcccctgtactggggcatat 444

                                                                       
Query: 245 aatcttcacaagaccaagggcctctcctcccatgatggtctactaggccatcctctgcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatcttcacaagaccaagggcctctcctcccatgatggtctactaggccatcctctgcta 504

                                                                       
Query: 305 catatgcaactagagacgcaagctctggggggtaccggttagttcatattgttgttccac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catatgcaactagagacgcaagctctggggggtaccggttagttcatattgttgttccac 564

                                                                       
Query: 365 ctatagggttgcagaccactttggtgccttgggtactttctctagctccttcattggaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctatagggttgcagaccactttggtgccttgggtactttctctagctccttcattggaga 624

                                                                       
Query: 425 ccctgtgttccatccaatagctgactgtgagtgtccacttctgtatttgccaggcactgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctgtgttccatccaatagctgactgtgagtgtccacttctgtatttgccaggcactgg 684

                                                                       
Query: 485 catagcctcacaagagacagctgtcctgtcagcaaaatattgctgtactaccttatctta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catagcctcacaagagacagctgtcctgtcagcaaaatattgctgtactaccttatctta 744

                                                                       
Query: 545 tgagacattagtagatttttctaggcaaagcaaaaactatcatttaataataatttaaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgagacattagtagatttttctaggcaaagcaaaaactatcatttaataataatttaaaa 804

                                                                       
Query: 605 tatccaagcaagttaataattcagtataaccatttgaatatgtttgggttcaactgtcaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatccaagcaagttaataattcagtataaccatttgaatatgtttgggttcaactgtcaa 864

                                                        
Query: 665 atatcttcgatattcctaatttttaaatagctgtgctgtagttaa 709
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 atatcttcgatattcctaatttttaaatagctgtgctgtagttaa 909


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no477_e18.g1 MSMg01no477_e18.g1 CHROMAT_FILE:
MSMg01no477_e18.g1 PHD_FILE: MSMg01no477_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:42 2005
         (547 letters)



>mm_chr1_69255071_69256017
          Length = 947

 Score = 1058 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtatcttctttatcaaacatttatttttttcactatgatagtaaaattctgtttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cattgtatcttctttatcaaacatttatttttttcactatgatagtaaaattctgtttta 688

                                                                       
Query: 61  agctgctattgcatttattatttttggaaacatgaggttaattttaaatgtgaaaaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agctgctattgcatttattatttttggaaacatgaggttaattttaaatgtgaaaaattg 628

                                                                       
Query: 121 cagaattttaatattatttttttccctgttttaaccatgatctgcacagatcttctgcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cagaattttaatattatttttttccctgttttaaccatgatctgcacagatcttctgcgt 568

                                                                       
Query: 181 aggaatgatacttactagtcttacaggacaacattagtgatctctgaggaaggacttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aggaatgatacttactagtcttacaggacaacattagtgatctctgaggaaggacttgag 508

                                                                       
Query: 241 cctgatcacatttgcagatatcttggcagtgtgaccatctgatgtcatgaacgcactgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cctgatcacatttgcagatatcttggcagtgtgaccatctgatgtcatgaacgcactgtc 448

                                                                       
Query: 301 accttgctggtccaactggtgctaggatgattagacccataccagatatgtagggagatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 accttgctggtccaactggtgctaggatgattagacccataccagatatgtagggagatc 388

                                                                       
Query: 361 aggaaaatgctagctactagaaactgcacgtagaaggagtaacacccgaggcttgaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggaaaatgctagctactagaaactgcacgtagaaggagtaacacccgaggcttgaggaa 328

                                                                       
Query: 421 cgtgacaagcatgtatcaaatcagggcaaggtaacaggaaaatactgtggggcagtggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgtgacaagcatgtatcaaatcagggcaaggtaacaggaaaatactgtggggcagtggag 268

                                                                       
Query: 481 gagtgtgagagaaggctaaaggaataaatccaacaatataaataaggaaaatgatgatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gagtgtgagagaaggctaaaggaataaatccaacaatataaataaggaaaatgatgatgc 208

                  
Query: 541 attcata 547
           |||||||
Sbjct: 207 attcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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