Query= MSMg01no477_g19.b1 MSMg01no477_g19.b1 CHROMAT_FILE:
MSMg01no477_g19.b1 PHD_FILE: MSMg01no477_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:51 2005
(601 letters)
>mm_chr1_155109438_155110438
Length = 1001
Score = 1154 bits (597), Expect = 0.0
Identities = 600/601 (99%)
Strand = Plus / Plus
Query: 1 tgctgctcgtcccctccggtcctgatgaagccacggttagcctttgagtacgtgttctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgctcgtcccctccggtcctgatgaagccacggttagcctttgagtacgtgttctca 260
Query: 61 caggacccactgtagtactgataaggaatccagggcccgtcttcccgagtgcgcttatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggacccactgtagtactgataaggaatccagggcccgtcttcccgagtgcgcttatag 320
Query: 121 atggcgaagctctctggacggctggtgtggaacttgaggcgcacgtaagtgatgtcaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcgaagctctctggacggctggtgtggaacttgaggcgcacgtaagtgatgtcaaaa 380
Query: 181 gcctttcctgcggaacaaacacatcagagtacgtaagtcgtgtggatgaagataagaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctttcctgcggaacaaacacatcagagtacgtaagtcgtgtggatgaagataagaaag 440
Query: 241 gccccccattgctatctagctgtgagatttgaggaagagcccagcattagaccaggaaaa 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccccccattgctaactagctgtgagatttgaggaagagcccagcattagaccaggaaaa 500
Query: 301 cctcaggacaccagacacactaatggccccgtaggctcgtctaagcctggaaattgccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcaggacaccagacacactaatggccccgtaggctcgtctaagcctggaaattgccca 560
Query: 361 tttccccacaagtggttcttaacataggccatgaaaacttgtataagtgcggtactaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttccccacaagtggttcttaacataggccatgaaaacttgtataagtgcggtactaata 620
Query: 421 cattttaaaataaaaccaaataatgagctcacctattcttactcctcgggcttcattgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattttaaaataaaaccaaataatgagctcacctattcttactcctcgggcttcattgaa 680
Query: 481 cgcttaattaaaatatcttttcttagaaatctgaaagcttttggaatgggtcctctgggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgcttaattaaaatatcttttcttagaaatctgaaagcttttggaatgggtcctctgggg 740
Query: 541 acgtccagtacattcaaagcctttccctttattaactagagtgcttctcttggtgcactg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acgtccagtacattcaaagcctttccctttattaactagagtgcttctcttggtgcactg 800
Query: 601 t 601
|
Sbjct: 801 t 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_g19.g1 MSMg01no477_g19.g1 CHROMAT_FILE:
MSMg01no477_g19.g1 PHD_FILE: MSMg01no477_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:51 2005
(640 letters)
>mm_chr1_155150559_155151603
Length = 1045
Score = 534 bits (276), Expect = e-156
Identities = 499/602 (82%), Gaps = 59/602 (9%)
Strand = Plus / Plus
Query: 1 ttggaattgcctctttaaaagtccacttccaagaactccctatactgaaaaacagagcta 60
|||||||||||||||||||||||||| |||| ||||||||| |||||| ||||| |||||
Sbjct: 212 ttggaattgcctctttaaaagtccacctccaggaactccctgtactgagaaacaaagcta 271
Query: 61 aatagctancatatctggaaaacaacttcacagacaggaaaaacaaacaaaaaaaaatgt 120
|| ||||| || ||||||||||||||||| ||||||| ||||||||||||
Sbjct: 272 aagagcta-cacgtctggaaaacaacttcatagacagg----------aaaaaaaaatgt 320
Query: 121 cttcccatgttaaaagagtaa-aggagagagcttattttctttttt-----cagaagggt 174
|||||||||||||||||| || ||||||||| || |||| |||||| |||||||||
Sbjct: 321 cttcccatgttaaaagag-aacaggagagaggttttttttttttttttttccagaagggt 379
Query: 175 caaatatatcagtgagagaaaccgagttatttttagacagcaatgtggtctgctattatt 234
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaatatatcagtgacagaaaccgagttatttttagacagcaatgtggtctgctattatt 439
Query: 235 tccaagcaaaggctaatcttgagctgattgtggtggcct--acgcctttaatcccagcac 292
|||||||||| |||||||||||| | ||||||| | || ||||||||||||||||
Sbjct: 440 tccaagcaaaaactaatcttgagccgggcgtggtgg--tgcacacctttaatcccagcac 497
Query: 293 ttgggagtcagaggtaggcagatt-ctgagttcgaggcctc--cctggtctacaaagtgt 349
| |||| |||||| |||| |||| |||||||||||| || ||||||||||| ||||
Sbjct: 498 tcaggaggcagaggcaggcggatttctgagttcgagg--tcagcctggtctacagagtga 555
Query: 350 gttccagaacagccagagcta-a-atggagaaatcctgtcttgaaaaaccaaaagaaaag 407
||||||| |||||||| |||| | | |||||||||| ||| |||||||||||| ||||
Sbjct: 556 gttccaggacagccagggctataca--gagaaatcctatctcgaaaaaccaaaaaaaaa- 612
Query: 408 aaaaaaaaaa--------aaaa-------------------aaaaaaagcaaatctttct 440
|||||||||| |||| |||||||| ||||||||||
Sbjct: 613 aaaaaaaaaacccaaaccaaaacaaaacaaaagaaacaaacaaaaaaaggaaatctttct 672
Query: 441 aaaggtgacgttagtttctgacttggttgcttaggtatcgaattttatgtgaaaattcat 500
||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||| |||
Sbjct: 673 aaaggtgacgttagtttatgacttggttgcctaggtatccaattgtatgtgaaaatgcat 732
Query: 501 gggttgcttagcacatatttataaaagaagaagagaaaaacgtggatggacaggagagca 560
||||||||| |||||||||||||||| |||||||||| ||| |||||||| |||| ||||
Sbjct: 733 gggttgcttggcacatatttataaaacaagaagagaagaacatggatggaaaggaaagca 792
Query: 561 gt 562
||
Sbjct: 793 gt 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1045
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1035
Effective search space: 652050
Effective search space used: 652050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
