Query= MSMg01no477_m16.b1 MSMg01no477_m16.b1 CHROMAT_FILE:
MSMg01no477_m16.b1 PHD_FILE: MSMg01no477_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:20 2005
(697 letters)
>mm_chr1_101864948_101866044
Length = 1097
Score = 1029 bits (532), Expect = 0.0
Identities = 655/696 (94%), Gaps = 7/696 (1%)
Strand = Plus / Minus
Query: 5 gaattccacatcccttaa-ccccttacc-cgataaaaacccctagcattcgagcctcgtg 62
|||||| ||| ||| ||| ||||||||| | |||||||||| |||| |||||||||||||
Sbjct: 920 gaattctaca-cccataatccccttacctc-ataaaaacccttagctttcgagcctcgtg 863
Query: 63 gccgacatccgttatctcctatgtgggatgcatgttggtccagagctccgtcattaaatg 122
||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 862 gccgatatctgttatctcctgtgtgggatgcatgtcggtccagagctccgtcattaaatg 803
Query: 123 tcctcatgtaattacatcaagaggtggtccttagtga-ttttttggatgcaagac-gaat 180
|||||| |||||||||||||||| |||||||| |||| |||||||| |||| | | ||||
Sbjct: 802 tcctcacgtaattacatcaagagatggtccttcgtgatttttttgggtgcatg-ctgaat 744
Query: 181 cgggaattgggtgagggtttccctactaggtctaacattcattgtaaacagataatcctg 240
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 743 tgggaattgggtgggggtttccctactaggtctaacattcattttaaacagatcatcctg 684
Query: 241 atcctttgatatcaactgctggattatatccaactgccaatgcaagcatggtagtgacta 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atcatttgatatcaactgctggattatatccaactgccaatgcaagcatggtagtgacta 624
Query: 301 caattatctgcttgtttatacacagtgtccatgagtattaatattgaagtctacatgctg 360
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 623 caattatctgcttgtttacacacagtgtccatgagtattaatactgaagtctatatgctg 564
Query: 361 actccatgtccaaggaatgttattaagcaccacgtgtgtacacaagtaaatgtagaaaag 420
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 563 actccatgtcgaaggaatgttattaagcaccatgtgtgtacacaggtaaatgtagaaaag 504
Query: 421 cactagcttactgaagaggctatacccaaagcaggcaataccctgaaaaatcactgcaaa 480
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 503 cactagcttactgaagaggctatactcaaagcaggcaataccctgaaacatcactgcaaa 444
Query: 481 ttttcacttaagaaagaaaaacagattggcaacaggctcttgataggagtccacagtcct 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 443 ttttcacttaagaaagaaaaacagattggcaacaggctcttgataggaggccacagtcct 384
Query: 541 ccataattttgtggctatcaatcaggtaagggaaatgctggaagcccctccataggtaga 600
|||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 383 ccataattttgtggctatcaatcaagtaagggcaatgccggaagcccctccataggtaga 324
Query: 601 ggacatgaccacaggccacgtagtctcaagacagatcttcattttaacgaggtacctaaa 660
||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 323 ggacatgaccacaggtcatgtagtctcaagacagatcttcattttaatgaggtacctaaa 264
Query: 661 ggtctggaggtttagccaataaactcccttcccagg 696
|| |||||||||||||||||||||||||||||||||
Sbjct: 263 ggcctggaggtttagccaataaactcccttcccagg 228
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_m16.g1 MSMg01no477_m16.g1 CHROMAT_FILE:
MSMg01no477_m16.g1 PHD_FILE: MSMg01no477_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:20 2005
(440 letters)
>mm_chr1_101667443_101668282
Length = 840
Score = 843 bits (436), Expect = 0.0
Identities = 439/440 (99%)
Strand = Plus / Plus
Query: 1 aggaatctgtggtgtaaaataaatctgtgtgctcagtaatgctgggaaggagaattagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaatctgtggtgtaaaataaatctgtgtgctcagtaatgctgggaaggagaattagtt 260
Query: 61 aagagagagaggaattgacttcctctgatgtggaaaaatcctatagactctaacttgatg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagagagaggaattgacttcctttgatgtggaaaaatcctatagactctaacttgatg 320
Query: 121 taaatttcacatagaagacatcattactggttcctcttttgttaacatttgacacgtttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatttcacatagaagacatcattactggttcctcttttgttaacatttgacacgtttc 380
Query: 181 tggcagcttcacactaaatgcacaataagttgatctatggcaaagcaagcaagtcagcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcagcttcacactaaatgcacaataagttgatctatggcaaagcaagcaagtcagcag 440
Query: 241 acttatgctagaacctaaataaacaagacctctaatgcagagccccgaggaagcaatcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttatgctagaacctaaataaacaagacctctaatgcagagccccgaggaagcaatcaa 500
Query: 301 aatgcatcttctctattatagatgtaaagcttttaaaagccaacaatgggctcacacatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgcatcttctctattatagatgtaaagcttttaaaagccaacaatgggctcacacatg 560
Query: 361 accctcacacccacttgtttctactcatcctccagccccttcctgttaaaaatagttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accctcacacccacttgtttctactcatcctccagccccttcctgttaaaaatagttttt 620
Query: 421 aaacgtttttcttttatgcc 440
||||||||||||||||||||
Sbjct: 621 aaacgtttttcttttatgcc 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
