CGTAAAGTTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTATGTACCCACAATTACTTTGATACCTAAAGCACACAAAGAT
CCAACAAAAAAGAGAACTTAAGACCAATTTTGCTAATGAGTATTGATATA
GATATACCAAATAAAATTCTCCCCAATTGAATCCTGGAACAAATCAAAAC
CATAATCTACCTTGATCAAGTAGGCTTTATCCCAGGGATGTAGGAATGGT
TTAATATATGAAATCTATTAATGTAATTCATGATATAAACAAACTTAAAG
AATAGAATTACATGATCATTTTATTAGATGCTGAAAAAGTATTTGACCAA
ATATAACATCCCTTTATGTTAAAAGTATTGGAAAGATCAGGAATTCAAGG
CAGATATCTAAGCATAATAAAACAATATAGGTCAGACCAGCAGCTAATAT
CAAATTAAATGGAGAGAGACTTGAAGCAATCCCACTAAAATCAGAGACAA
GACAAGGATGACCACTCTCCTCATATCTATTCAATATAGTACTAGATGTT
TTAGCTAGAGTAATAAAACAATAAAAGGAGATCAAGGGAATAAAAATTGG
CAAAGAATAAGTCAAGGTATCACTATTTGCAGATGATATGATAGTATACA
TTAGCAATCTGCAAAATGATAAATGGGCTGAAAAAAGAAATTAGGGAAAC
AAAACCTTTTGTAATAGCCACAAATAATGTAAAATGTCTTGTGGTAACTC
TAAC

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAACAATTCTATTAATAAATAAATAGCAACTTTGG
GGGGCTTTTTATTAAAAAAATACAGGATCTTCCTATGTAGCCCTGGTTTA
CTATGTACTCCAAGACATCCTGGAACTTACATATATCTCCTGTCTTTCCC
TCACAAGTACTGGGATTAAAGTCATGCAACACTACACACTTTAAAAAAGT
TAGCTTTTTAAAATTTATATGTACGATCATTTCCTTAGACTGCGGCCTCT
AAATCTACATGGATATTGTTTTTTAGAGTTAGTGTTACCTTCTAGGATAT
AAGGCTGAAAACTTTTATTTAAAAAACAGGTCATGCTGGCTTGACATAAC
CAATTGAAAAATCTCTTTTACAACAATCAGCATAGGAATTTAACTTGTAC
AAAATGCACATTTGAGTGAAACAAATTTTTGTTTATTTTTTTTAGTTTCT
TTTACTGTTGATGTGATAAAATACCAGGACAAAACAACCTAAGGGAGAAA
GAGTTCATTTTAGCTGACAATTCAAGATACCCTCATTTTGGTCGGAAAGT
CAGTCATTTTGAAGCAGGTAGCCATGTTGCATCTCGAATCAGGAAGAAAG
ACGAACACATCAATTTCCTTACTACATTTTATACTGGTCCAGCATCCCCT
GCCTAGGGAATGATCTCACAGTTAAGACAAGTAGTTCTTATTTAATCAAT
ATAGTCAAGATAATCACCCN

Query= MSMg01no477_o13.g1 MSMg01no477_o13.g1 CHROMAT_FILE:
MSMg01no477_o13.g1 PHD_FILE: MSMg01no477_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:29 2005
         (684 letters)



>mm_chr1_44570053_44571137
          Length = 1085

 Score = 1220 bits (631), Expect = 0.0
 Identities = 673/689 (97%), Gaps = 6/689 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctattaataaataaatagcaactttggggggctttttattaaaaaaatacaggatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 attctattaataaataaatagcaactttggggggctttttattaaaaaaatacaggatct 728

                                                                       
Query: 61  tcctatgtagccctggtttactatgtactccaagacatcctggaacttacatatatctcc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 727 tcctatgtagccctggtttactatgtactccaagacatccgggaacttacatatatctcc 668

                                                                       
Query: 121 tgtctttccctc-acaagtactgggattaaagtcatgcaacactacacactttaaaaaag 179
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgtctttccctcga-aagtactgggattaaagtcatgcaacactacacactttaaaaaag 609

                                                                       
Query: 180 ttagctttttaaaatttatatgtacgatcatttccttagactgcggcctctaaatctaca 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttaactttttaaaatttatatgtacgatcatttccttagactgcggcctctaaatctaca 549

                                                                       
Query: 240 tggatattgttttttagagttagtgttaccttctaggatataaggctgaaaacttttatt 299
           |||||||||   || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tggatattggcattcagggttagtgttaccttctaggatataaggctgaaaacttttatt 489

                                                                       
Query: 300 taaaaaacaggtcatgctggcttgacataaccaattgaaaaatctcttttacaacaatca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 taaaaaacaggtcatgctggcttgacataaccaattgaaaaatctcttttacaacaatca 429

                                                                       
Query: 360 gcataggaatttaacttgtacaaaatgcacatttgagtgaaacaaatttttg----ttta 415
           |||||||||||||||||||||||||||||||||||||||||| |||||||||    ||| 
Sbjct: 428 gcataggaatttaacttgtacaaaatgcacatttgagtgaaataaatttttgcttttttt 369

                                                                       
Query: 416 ttttttttagtttcttttactgttgatgtgataaaataccaggacaaaacaacctaaggg 475
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 368 ttttttttagtttcttttactgttaatgtgataaaataccaggacaaaacaacctaaggg 309

                                                                       
Query: 476 agaaagagttcattttagctgacaattcaagataccctcattttggtcggaaagtcagtc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaaagagttcattttagctgacaattcaagataccctcattttggtcggaaagtcagtc 249

                                                                       
Query: 536 attttgaagcaggtagccatgttgcatctcgaatcaggaagaaagacgaacacatcaatt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attttgaagcaggtagccatgttgcatctcgaatcaggaagaaagacgaacacatcaatt 189

                                                                       
Query: 596 tccttactacattttatactggtccagcatcccctgcctagggaatgatctcacagttaa 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tccttactacattttatactggtccagcatcccctgcctagggaatgatctcacagttaa 129

                                        
Query: 656 gacaagtagttcttatttaatcaatatag 684
           |||||||||||||||||||||||||||||
Sbjct: 128 gacaagtagttcttatttaatcaatatag 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space:   724550
Effective search space used:   724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)