CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCTGGGTTGTGCAGAGAAACTTGCTTCCCTCCAGGCAGTGATCATGC
CTCAGACTTGGTTTTAGTGCTCACCTCACCCTCCAGAATCATCTCTGAGT
TCCCACCACCCCCACCCCACTCTGCCATATTGACTCTGCATTCCTCAGGT
CTGAGGTTAGAGTTTGGCTGACCCTTCACATGAGGGCCAGTGCCAAGGGA
CACCCATTGGAAAGGCTCTCCATTTCCTAACATTCTTGTCTGTAGATTGT
TCTACTTGACTTTGAGCTAGAACTTGCTAAGTGTGTATTGAACATTCCTA
ATACTAAAATAGGAGATCCCATATAGTTCAAAACTCTAAGAACTTTTAAG
CATTGACATGATGTCTCAAATGGAAAAAGTTCATCCCTGATCTCTGGTGA
TAGATCACAGACAAAACCAGCATCAAAAATATTGTATAAAGTTACTCTCA
GCTTATGTTTATAAGTTGTATATGAATATAAAGAGATTTTATGTTTATAT
CCAGGCTTCTCCTCAAGATATCTCAGGATATTTATTTAAAAAAACGTCTA
AAATCTGATGAAAATCAATGTCTTAAGTACTTCTGGTTCCAAGCATTTCA
GACAGGGACACTTAACCTATAGTAAATGTGACCAGTGAGTGGGGTGGCCC
TTTGAAACTTGCTTTTGCTTGTCATGTTGAGAGCTGCCTTGAAGAGAGAT
G

NCGATGATGGAGCTGCGCGCCTGTCATATTGTGACCTATAAGTCGCGGAA
TTCTCAGAATCTTAAGNTACCAGGAAAAAAGGGNAAAAAAAAAAAAGGGG
GTTAAAAAAAAAATTTTTTACATCCAATTCCCCCCCCAAAAATTTTTTTT
TTGGGGGGGTGTTTTCCCCCTTCCTTCTTATTATTACGCCTTTTTCCTTT
TCTTCCTTAAAAAAATTTAATTTATTTTTTTTTCTCTTTCTTTTTTCTTC
CCTTTATTTTACTAAATCAAAAGTAGATTTAGTTGAGTTTTTTTTCCTCT
TTAAAAAAAAAAAAGNCTAGTGGCCCTTGTGGCCGTTGCGTCTTCTTCCC
CACCTCAATAAAAAATAAAAACTTCAGTCTTTGTTTGGGGCCGCCCCCCT
CTCCTTTCCTTTTTTATCTCTCCATTTCCTACTCCTAATACCTTTTTTCT
TTACTTCCAGCGTTCCTGCTTGTGGTCTTCCGCCCCCTTGTTTTGGTTTT
TTCATTTCCTCTTTTTCTTCTCTTTTCCCCCCTTATTCCTCCTCTTGCTA
TTTTTTTTGTTCGCAGCGCCCGGGTTGTGTTGGAGCTT

Query= MSMg01no477_o22.b1 MSMg01no477_o22.b1 CHROMAT_FILE:
MSMg01no477_o22.b1 PHD_FILE: MSMg01no477_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:31 2005
         (607 letters)



>mm_chr1_77246356_77247362
          Length = 1007

 Score = 1112 bits (575), Expect = 0.0
 Identities = 596/603 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagctgggttgtgcagagaaacttgcttccctccaggcagtgatcatgcctcaga 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaattcagctgggttgtgaagagaaacttgcttccctccaggcagtgatcatgcctcaga 748

                                                                       
Query: 65  cttggttttagtgctcacctcaccctccagaatcatctctgagttcccaccacccccacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cttggttttagtgctcacctcaccctccagaatcatctctgagttcccaccacccccacc 688

                                                                       
Query: 125 ccactctgccatattgactctgcattcctcaggtctgaggttagagtttggctgaccctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 687 ccactctgccatattgactctgcattcctcaggtctgaggttagagttttgctgaccctt 628

                                                                       
Query: 185 cacatgagggccagtgccaagggacacccattggaaaggctctccatttcctaacattct 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 627 cacatgagggccagtgccaagggacacccattggaaaggctctccatttcctgacattct 568

                                                                       
Query: 245 tgtctgtagattgttctacttgactttgagctagaacttgctaagtgtgtattgaacatt 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgtctgtagattgttctacttgagtttgagctagaacttgctaagtgtgtattgaacatt 508

                                                                       
Query: 305 cctaatactaaaataggagatcccatatagttcaaaactctaagaacttttaagcattga 364
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 507 cctaatactaaaataggagatcccatatggttcagaactctaagaacttttaagcattga 448

                                                                       
Query: 365 catgatgtctcaaatggaaaaagttcatccctgatctctggtgatagatcacagacaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catgatgtctcaaatggaaaaagttcatccctgatctctggtgatagatcacagacaaaa 388

                                                                       
Query: 425 ccagcatcaaaaatattgtataaagttactctcagcttatgtttataagttgtatatgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccagcatcaaaaatattgtataaagttactctcagcttatgtttataagttgtatatgaa 328

                                                                       
Query: 485 tataaagagattttatgtttatatccaggcttctcctcaagatatctcaggatatttatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tataaagagattttatgtttatatccaggcttctcctcaagatatctcaggatatttatt 268

                                                                       
Query: 545 taaaaaaacgtctaaaatctgatgaaaatcaatgtcttaagtacttctggttccaagcat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 267 taaaaaaacgtctaaaatctgatgaaaatcaatgtcttaagtacttctgtttccaagcat 208

              
Query: 605 ttc 607
           |||
Sbjct: 207 ttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)