NAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGACC
GCGGAATTCACCAAGTCTGGAGGTCAGCCCCCAAACCCTATTAAACTGAA
TATGAAGGGACCGGGCTTTTTTCCCCACCCCCCAGAAGAACCAAAAGTCC
AGGGCCTTTTCCACCTAAAACCGGTTGGAGGCCACCCGGGGGACCAGGAA
ACCTTATGGAAAGGAGAAAAAAAAAATTTTAACCAAAAAAAGAATTGAAG
GACCTAAGTGGCATTTGGTTATATCATCAAACTATACCCTTAACCTCATT
GAAAATAACTTGTTATATATATTACCACATTTTAAAGCCCAAAGCTAGTA
TATTAAAATGGAATAAATACAGAGTTATGGTTCCCAATTCCTTATTTTAT
ATCTATTAAATGGCTTGTAACTATATTAAAATTCTTTCAGTAAAGGGTTG
CACTTTACTTTTGTGTTTGAATTATTATTTCACAGTAAATACAGTTCGTT
TTTATTAGCAATTTCATGTGTGCAGAAAAAGGTTACTGTGGAACACCTAA
TACATGTATTTATTTCATGAAAGGCAGGATATGGTGAAAAAATGTTAGTG
GTGAAAATGCTGCCTCTCAAAATATGCTTTGAGTAAATAGTGATTTCCAT
GGCAACCATATACATTAAAAAATATTTGGAGAGGTTTATGATTTTAAGCT
TCAAATAGTGTCCCGTGAAGGTACCAAAGTAG

NCCGATGCAGTGGGAGGCCTGGCGGCCGCCTTTTCAAAAAAGGTAGGTGA
ACTATAGAATGCANCAAAGAGATCTCTGTGTAGTCCTAGCTCCCCACCCC
CTCCTTTTTCTGGGTTTTCAAATTAGATTTCTTCCAGAAATCCAACCCCA
CTGCTTTTTATGGAAGCTTGAAACCATTCAGTGGCTTATTTGTGTTCCTC
GAGGTGCAGATAAGAGATTTAACTAGGAAGACAGAAGATTAACTCACCTT
GCAGGGTGGTTCACTAAACTGGCTAGCAGGTTCATATCTATATGGTCTCT
GGGAGAACTTGGAAAGATTTCATTTCTTACTAAGAACAAATGATGAAGAT
CGGGAACATGATTGCTGGAAATTGAGTACAGAAATCCCTAGAAAACTATC
AGATAACCTGTTATTTCTCACTTAAAAAATAAAGATGATCAAATGCTAAA
CAGTTTCCAATTGTATTTCAGTTTGCATCCATGTACAGAAATAATATCTT
GCTATTGTTGAATAACTCTGTAATTTGGTTTGTAATTTAATATTAAGTGT
GAAGGTTTATTTTGAGAGTTACTTAAAACCAGATTTAATTTACAAAAACC
GAAAGGGATACCTACCATTCATTGTTTCAGGGTGCTACTGGGATGCAGCT
CACACATCTCAGGCATGCTCTCTGCCACGGGGTTACGTTTCCAGGCTCAT
CTTTTATCTCATATGATGGGCTACATCCTTCAGCCTTAGCTGTCTTCACT
G

Query= MSMg01no477_p11.b1 MSMg01no477_p11.b1 CHROMAT_FILE:
MSMg01no477_p11.b1 PHD_FILE: MSMg01no477_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:33 2005
         (283 letters)



>mm_chr1_179045242_179045924
          Length = 683

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttgtaactatattaaaattctttcagtaaagggttgcactttacttttgtgtttgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gcttgtaactatattaaaattctttcagtaaagggttgcactttacttttgtgtttgaat 423

                                                                       
Query: 61  tattatttcacagtaaatacagttcgtttttattagcaatttcatgtgtgcagaaaaagg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 422 tattatttcacagtaaatacagttcatttttattagcaatttcatgtgtgcagaaaaagg 363

                                                                       
Query: 121 ttactgtggaacacctaatacatgtatttatttcatgaaaggcaggatatggtgaaaaaa 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 362 ttactgtggaacacctaatacatgtatttatttcatgaaaggtaggatatggtgaaaaaa 303

                                                                       
Query: 181 tgttagtggtgaaaatgctgcctctcaaaatatgctttgagtaaatagtgatttccatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgttagtggtgaaaatgctgcctctcaaaatatgctttgagtaaatagtgatttccatgg 243

                                                     
Query: 241 caaccatatacattaaaaaatatttggagaggtttatgattt 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caaccatatacattaaaaaatatttggagaggtttatgattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no477_p11.g1 MSMg01no477_p11.g1 CHROMAT_FILE:
MSMg01no477_p11.g1 PHD_FILE: MSMg01no477_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:34 2005
         (677 letters)



>mm_chr1_178866297_178867373
          Length = 1077

 Score = 1286 bits (665), Expect = 0.0
 Identities = 674/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtgtagtcctagctccccaccccctcctttttctgggttttcaaattagatttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgtagtcctagctccccaccccctcctttttctgggttttcaaattagatttcttc 260

                                                                       
Query: 61  cagaaatccaaccccactgctttttatggaagcttgaaaccattcagtggcttatttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaatccaaccccactgctttttatggaagcttgaaaccattcagtggcttatttgtg 320

                                                                       
Query: 121 ttcctcgaggtgcagataagagatttaactaggaagacagaagattaactcaccttgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 321 ttcctcgaggtgcagataagagatttaactaggaagacagaagattaactcaccaggcag 380

                                                                       
Query: 181 ggtggttcactaaactggctagcaggttcatatctatatggtctctgggagaacttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggttcactaaactggctagcaggttcatatctatatggtctctgggagaacttggaa 440

                                                                       
Query: 241 agatttcatttcttactaagaacaaatgatgaagatcgggaacatgattgctggaaattg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagttcatttcttactaagaacaaatgatgaagatcgggaacatgattgctggaaattg 500

                                                                       
Query: 301 agtacagaaatccctagaaaactatcagataacctgttatttctcacttaaaaaataaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtacagaaatccctagaaaactatcagataacctgttatttctcacttaaaaaataaag 560

                                                                       
Query: 361 atgatcaaatgctaaacagtttccaattgtatttcagtttgcatccatgtacagaaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatcaaatgctaaacagtttccaattgtatttcagtttgcatccatgtacagaaataa 620

                                                                       
Query: 421 tatcttgctattgttgaataactctgtaatttggtttgtaatttaatattaagtgtgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatcttgctattgttgaataactctgtaatttggtttgtaatttaatattaagtgtgaag 680

                                                                       
Query: 481 gtttattttgagagttacttaaaaccagatttaatttacaaaaaccgaaagggataccta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttattttgagagttacttaaaaccagatttaatttacaaaaaccgaaagggataccta 740

                                                                       
Query: 541 ccattcattgtttcagggtgctactgggatgcagctcacacatctcaggcatgctctctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccattcattgtttcagggtgctactgggatgcagctcacacatctcaggcatgctctctg 800

                                                                       
Query: 601 ccacggggttacgtttccaggctcatcttttatctcatatgatgggctacatccttcagc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccacggggttacgtttccaggctcatcttttatctcatatgatgggctacatccttcagc 860

                            
Query: 661 cttagctgtcttcactg 677
           |||||||||||||||||
Sbjct: 861 cttagctgtcttcactg 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)