Query= MSMg01no478_d12.b1 MSMg01no478_d12.b1 CHROMAT_FILE:
MSMg01no478_d12.b1 PHD_FILE: MSMg01no478_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:53 2005
(666 letters)
>mm_chr1_104071269_104072334
Length = 1066
Score = 1214 bits (628), Expect = 0.0
Identities = 644/656 (98%), Gaps = 12/656 (1%)
Strand = Plus / Plus
Query: 1 cctatagaggatcattttaattaaaacaatagcaggtaggctgaagagttgtctactctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctatagaggatcattttaattaaaacaatagcaggtaggctgaagagttgtctactctt 260
Query: 61 ttagacatactgagttcaattcccagaaaatatatgatggctcaaaatcatcaataatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagacatactgagttcaattcccagaaaatatatgatggctcaaaatcatcaataatga 320
Query: 121 ggtctggtgcttttttattgtgttctgtcatacatgtaggaagaactctgcttacataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtctggtgcttttttattgtgttctgtcatacatgtaggaagaactctgcttacataat 380
Query: 181 aaataaataaatcttgaaaaacaaaacaaacaaacaaaaattctacatagccaacaaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataaataaatcttgaaaaacaaaacaaacaaacaaaaattctacatagccaacaaagc 440
Query: 241 acatgaaattttcctgaattaattattttcccgatgaaacatatactgataagcatgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgaaattttcctgaattaattattttcccgatgaaacatatactgataagcatgtat 500
Query: 301 ccaggctgacctgtcaatgaatcacaagcaatatttgatttgtttgcaagagttttaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaggctgacctgtcaatgaatcacaagcaatatttgatttgtttgcaagagttttaatt 560
Query: 361 tcagtgcctgtaactctcttgtgtgctggtgcatggaagtgggcaatacagagaaaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagtgcctgtaactctcttgtgtgctggtgcatggaagtgggcaatacagagaaaaata 620
Query: 421 tcactatagtttctcaggtgttgtccatcttaattattctgagacagaatctctcattgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcactatagtttctcaggtgttgtccatcttaattattctgagacagaatctctcattgg 680
Query: 481 ccttatattcatctgctgtggtgaggtttggctgtaccactttgtgctccctgctgccca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttatattcatctgctgtggtgaggtttggctgtaccactttgtgctccctgctgccca 740
Query: 541 ggactatcttggatctatgaatggaaaatatggaaaatacagatacacacacacacacac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggactatcttggatctatgaatggaaaatatggaaaatacagatacacacacacacacac 800
Query: 601 acacacncnnanagagagagagagagagagagagagagagagagaaggagagagag 656
||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 aca----------gagagagagagagagagagagagagagagaga--gagagagag 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_d12.g1 MSMg01no478_d12.g1 CHROMAT_FILE:
MSMg01no478_d12.g1 PHD_FILE: MSMg01no478_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:53 2005
(669 letters)
>mm_chr1_104272429_104273497
Length = 1069
Score = 1006 bits (520), Expect = 0.0
Identities = 532/536 (99%), Gaps = 2/536 (0%)
Strand = Plus / Minus
Query: 135 tatttgttatattacactctgaggtttaagttgttcgtgcttaataacaatctgaaaaat 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 tatttgttatattacactctgaggtttaagttgttcgtgcttaataacaatctgaaaaat 1010
Query: 195 attagatgataaattgaagaaataattaattcataactttaaaaaagttattattgtatt 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 attagatgataaattgaagaaataattaattcataactttaaaaaagttattattgtatt 950
Query: 255 tggtcgtgattattttatcattatcactaattatcttagtccctttctttgactatttta 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tggtcgtgattattttatcattatcactaattatcttagtccctttctttgactatttta 890
Query: 315 gaaattaaactttatcctagcaagtaacactcctagcaggagtgaagatgaaggaatgga 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gaaattaaactttatcctagcaagtaacactcctagcaggagtgaagatgaaggaatgga 830
Query: 375 gcattttatctgtaaagctagatatccccggtccacatgtatttcttctatctctgagaa 434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 acattttatctgtaaagctagatatccccggtccacatgtatttcttctatctctgagaa 770
Query: 435 tgtttcatttttcagggctgaggtaatagctcagttgatattgtacttgccttgcccata 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tgtttcatttttcagggctgaggtaatagctcagttgatattgtacttgccttgcccata 710
Query: 495 atctatatttccaaaagctggatatagtactgtgaacttgtaattccagatctggacaag 554
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 709 atctatatttccaaaagctggatatagtactgtgaacttgtaattctagatctggacaag 650
Query: 555 caaaaccaaatagattcctgaggtaactgtccaatcaacttagactaatttagttttaac 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 caaaaccaaatagattcctgaggtaactgtccaatcaacttagactaatttagttttaac 590
Query: 615 ccaggaaaagacctgctatagtggacttttcccccta-ttgattaaataataaaga 669
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 589 ccaggaaaagacctgctatagtggacttttcccc-taattgattaaataataaaga 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
