Query= MSMg01no478_e09.b1 MSMg01no478_e09.b1 CHROMAT_FILE:
MSMg01no478_e09.b1 PHD_FILE: MSMg01no478_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:57 2005
(319 letters)
>mm_chr1_43268886_43269605
Length = 720
Score = 580 bits (300), Expect = e-170
Identities = 312/316 (98%), Gaps = 1/316 (0%)
Strand = Plus / Minus
Query: 1 tgagccttgttcatggcaatctcagagttgcctctgtaatacagtaagtatatcagctgg 60
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 516 tgagccttgttcatcgcaatctcagagttgcctctttaatacagtaagtatatcagctgg 457
Query: 61 tcttggtcttaccacagaccaagaggtcaccatcctacaagtcctcccagtccctgtccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcttggtcttaccacagaccaagaggtcaccatcctacaagtcctcccagtccctgtccc 397
Query: 121 tactggttccacttctagtcaactctttgagatcctgccactccataactgcccctagtg 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tactgtttccacttctagtcaactctttgagatcctgccactccataactgcccctagtg 337
Query: 181 accccagcctatggcaggatcacccccaagagaccctgaattggaattatttcatgtctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 accccagcctatggcaggatcacccccaagagaccctgaattggaattatttcatgtctt 277
Query: 241 ctgat-ccccagaatatttctctgtcctttaataagactctactcgggattcttctagct 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctgatcccccagaatatttctctgtcctttaataagactctactcgggattcttctagct 217
Query: 300 atactctctgctatgg 315
||||||||||||||||
Sbjct: 216 atactctctgctatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_e09.g1 MSMg01no478_e09.g1 CHROMAT_FILE:
MSMg01no478_e09.g1 PHD_FILE: MSMg01no478_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:57 2005
(319 letters)
>mm_chr1_43067355_43068073
Length = 719
Score = 451 bits (233), Expect = e-131
Identities = 283/319 (88%), Gaps = 30/319 (9%)
Strand = Plus / Plus
Query: 1 taaggccatcgggaaataataaggtgtgccttgtccacctctgtaattatttcctcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaggccatcgggaaataataaggtgtgccttgtccacctctgtaattatttcctcacag 260
Query: 61 tgactgggcctgaagacagactctcctcatctgacgtgttcattagactcagaaatttga 120
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 261 tgactgggcctgaagacagactctcctcagctgacatgttcattagactcagaaacttga 320
Query: 121 atcatatagaaaggggaaatacagtgaaacaaatgcaaaagagcatttctcaggatgcct 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatatggaaaggggaaatacagtgaaacaaatgcaaaagagcatttctcaggatgcct 380
Query: 181 cggcttataagagaccctcacacccttgatcatggacagtctgtctttgcacttttataa 240
||||||||||||||||||||||||||||| |
Sbjct: 381 cggcttataagagaccctcacacccttga------------------------------a 410
Query: 241 ccaggaccagggcctactctgtggcctgcagtttgtgatagttgcctgatcttttttcca 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ccaggaccagggcctattctgtggcctgcagtttgtgatagttgcctgatcttttttcca 470
Query: 301 cccatggcttggtaaagaa 319
|||||||||| ||||||||
Sbjct: 471 cccatggcttagtaaagaa 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
